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Updated: Apr 20, 2026

Yeast As a Chassis for Developing Functional Assays to Study Human P53
Published on: August 4, 2019
Ranking the Binding Energies of p53 Mutant Activators and Their ADMET Properties
Sara Ibrahim Omar1, Jack Tuszynski1,2
1Department of Oncology, University of Alberta, Edmonton, AB, Canada, T6G 1Z2.
Abstract:
The guardian of the genome, p53, is the most mutated protein found in all cancer cells. Restoration of wild-type activity to mutant p53 offers promise to eradicate cancer cells using novel pharmacological agents. Several molecules have already been found to activate mutant p53. While the exact mechanism of action of these compounds has not been fully understood, a transiently open pocket has been identified in some mutants. In our study, we docked twelve known activators to p53 into the open pocket to further understand their mechanism of action and rank the best binders. In addition, we predicted the absorption, distribution, metabolism, excretion and toxicity properties of these compounds to assess their pharmaceutical usefulness. Our studies showed that alkylating ligands do not all bind at the same position, probably due to their varying sizes. In addition, we found that non-alkylating ligands are capable of binding at the same pocket and directly interacting with Cys124. The comparison of the different ligands demonstrates that stictic acid has a great potential as a p53 activator in terms of less adverse effects although it has poorer pharmacokinetic properties.
Insights
Restoring tumor suppressor p53 function in cancer cells shows promise. This study docked p53 activators, revealing stictic acid as a potential candidate with fewer adverse effects but needing pharmacokinetic improvements.
Area of Science:
- Oncology
- Molecular Biology
- Pharmacology
Background:
- The tumor suppressor protein p53 is frequently mutated in cancer.
- Restoring wild-type p53 activity is a therapeutic strategy for cancer.
- The mechanism of action for mutant p53 activators is not fully understood.
Purpose of the Study:
- To investigate the binding mechanisms of known p53 activators.
- To identify potential p53-restoring drug candidates.
- To predict the drug-like properties of these activators.
Main Methods:
- Molecular docking of twelve known p53 activators into a transiently open pocket of mutant p53.
- Prediction of Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) properties.
- Analysis of ligand binding sites and interactions, including with Cys124.
Main Results:
- Ligand binding positions varied, particularly for alkylating agents, likely due to size differences.
- Non-alkylating ligands were found to bind within the same pocket and interact with Cys124.
- Stictic acid showed potential as a p53 activator with a favorable safety profile but suboptimal pharmacokinetics.
Conclusions:
- Understanding ligand interactions with mutant p53 can guide the development of novel cancer therapies.
- Stictic acid warrants further investigation as a potential therapeutic agent for p53-mutated cancers.
- Pharmacokinetic optimization is necessary for stictic acid to maximize its therapeutic utility.
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