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Randomised P-values and nonparametric procedures in multiple testing.

Joshua D Habiger1, Edsel A Peña1

  • 1Department of Statistics, 216 LeConte College, University of South Carolina, Columbia, SC 29208, USA.

Journal of Nonparametric Statistics
|November 25, 2014
PubMed
Summary
This summary is machine-generated.

This study introduces a new method to ensure P-values meet uniformity assumptions for false discovery rate (FDR) control. This enhances the robustness of multiple testing procedures, especially with discrete or misspecified distributions.

Keywords:
P-value statisticsfalse discovery ratemicroarraymultiple testingrandomisation

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Area of Science:

  • Statistics
  • Statistical Inference
  • Hypothesis Testing

Background:

  • Multiple hypothesis testing procedures for false discovery rate (FDR) control often assume P-value statistics are uniformly distributed under null hypotheses.
  • This uniformity assumption can fail with discrete test statistics or misspecified distributional models for observables.

Purpose of the Study:

  • To introduce a stochastic process framework that ensures P-value statistics satisfy the uniformity condition, even with discrete test statistics.
  • To enhance the robustness of multiple testing procedures by allowing the use of nonparametric tests.

Main Methods:

  • A stochastic process framework is developed utilizing a uniform variate.
  • This framework enables P-value statistics to meet uniformity conditions irrespective of the test statistic's distribution.
  • Nonparametric tests can be employed to generate P-value statistics that satisfy the uniformity condition.

Main Results:

  • The proposed method ensures P-value statistics satisfy the uniformity condition, even when test statistics have discrete distributions.
  • Multiple testing procedures using these P-values exhibit enhanced robustness properties.
  • Simulation studies indicate improved performance of FDR methods with nonparametric randomized test P-values when the observable model is nonparametric or misspecified.

Conclusions:

  • The introduced stochastic process framework provides a robust solution for multiple hypothesis testing under challenging distributional assumptions.
  • Nonparametric randomized P-values enhance the reliability and performance of FDR control methods in complex statistical scenarios.
  • This approach broadens the applicability of FDR control to a wider range of statistical models and data types.