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16p11.2 de novo microdeletion encompassing SRCAP gene in a patient with speech impairment, global developmental
Abstract:
We describe a patient with speech impairment, global developmental delay, behavioural problems and a 186 kb de novo microdeletion on 16p11.2. There are four OMIM Phenotypes entries partially overlapping with the deleted region and related to recurrent microdeletions/microduplications in 16p11.2. A detailed review of published data shows that microdeletions/microduplications' boundaries do not include genes that are deleted in the case here reported. The deletion encompasses 9 RefSeq genes and includes SRCAP (Snf2-related CREBBP activator protein, OMIM*611421), a disease causing gene. Recently, truncating mutations in the SRCAP gene have been shown to cause Floating-Harbor syndrome (FHS, OMIM#136140), a rare disorder characterized by peculiar facial features, short stature with delayed osseous maturation and speech impairment. The patient reported here shows few subtle phenotypic features resembling that of FHS, but she does not have sufficient signs and symptoms for the clinical diagnosis and a clinical classification based on facial gestalt is not possible. This is the first report of a 16p11.2 deletion completely removing one copy of SRCAP, suggesting that haploinsufficiency of this gene could be associated to speech impairment, global developmental delay, behavioural problems and few subtle phenotypic features resembling FHS. However, further evidence for the putative causative role of SRCAP isolated deletion is needed.
Insights
A patient
Area of Science:
- Genetics
- Neurodevelopmental Disorders
- Human Genetics
Background:
- 16p11.2 microdeletions are associated with various neurodevelopmental and behavioral phenotypes.
- Floating-Harbor syndrome (FHS) is a rare genetic disorder caused by mutations in the SRCAP gene.
- The SRCAP gene (OMIM*611421) plays a role in transcriptional regulation and chromatin remodeling.
Observation:
- A patient presented with speech impairment, global developmental delay, and behavioral issues due to a de novo 186 kb microdeletion on 16p11.2.
- This deletion encompasses nine RefSeq genes, including SRCAP, and is the first reported instance of a 16p11.2 deletion fully removing one copy of SRCAP.
- The patient exhibited subtle features reminiscent of FHS, though not meeting the diagnostic criteria.
Findings:
- Haploinsufficiency of the SRCAP gene, due to the deletion of one copy, is suggested as a potential cause for the observed phenotype.
- The patient's symptoms of speech impairment, global developmental delay, and behavioral problems align with potential SRCAP haploinsufficiency.
- Subtle phenotypic features resembling FHS were noted, but a definitive clinical diagnosis was not possible based on facial characteristics.
Implications:
- This case suggests that isolated SRCAP deletion via 16p11.2 microdeletion may contribute to a spectrum of neurodevelopmental and behavioral issues.
- Further research is needed to confirm the causative role of SRCAP isolated deletion in these phenotypes.
- Understanding the role of SRCAP haploinsufficiency expands knowledge of 16p11.2 deletion syndrome and its genetic underpinnings.
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