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Peroxisomes are specialized organelles present in fungi, plant, and animal cells. It can vary in number, size, morphology, and activity depending on the type of tissue and the nutritional state of the cell. For example, cells with active lipid metabolism, such as adipocytes, neurons, and hepatocytes, have more peroxisomes than other cells in the body. Besides their primary role in breaking down complex organic molecules, peroxisomes can also synthesize specific macromolecules and participate in...
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In the presence of oxidizing agents, phenols are oxidized to quinones. Quinones can be easily reduced back to phenols using mild reducing agents. The electron-donating hydroxyl group enhances the reactivity of the aromatic ring, enabling oxidation of the ring even in the absence of an α hydrogen.
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Oxidation-reduction or redox reactions involve the transfer of electrons from one molecule or atom to another. When an atom gains an electron, another atom must lose an electron, meaning oxidation and reduction must occur together. Since the redox occurs in pairs, the atom that gets oxidized is also called the reducing agent or reductant, and the atom that is reduced is also called the oxidizing agent or oxidant. A straightforward way to remember the definitions of oxidation and reduction is...
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Redox reactions are vital biochemical processes that underpin energy metabolism in cells. These reactions involve the transfer of electrons between molecules, occurring in tandem as oxidation and reduction. Oxidation refers to the loss of electrons, while reduction denotes their gain. This coupling ensures the seamless flow of electrons through metabolic pathways. For example, in bacterial metabolism, glucose undergoes oxidation to carbon dioxide, while oxygen is simultaneously reduced to...
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A primer on peroxiredoxin biochemistry.

P Andrew Karplus1

  • 1Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA.

Free Radical Biology & Medicine
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PubMed
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Peroxiredoxins, crucial antioxidant enzymes, exhibit tunable catalytic properties. Their function is significantly influenced by the dynamic balance between folded and unfolded protein structures.

Keywords:
ChaperoneFloodgate hypothesisHydrogen peroxideOxidative stressRedox signaling

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Area of Science:

  • Biochemistry
  • Enzymology
  • Protein Science

Background:

  • Peroxiredoxins (Prx) are a major class of antioxidant enzymes.
  • Their enzymatic family was identified in the 1990s.
  • They are vital for managing reactive oxygen species in most organisms.

Observation:

  • Peroxiredoxins exhibit unique catalytic mechanisms involving redox-active cysteine residues.
  • Their enzymatic function is intrinsically linked to conformational dynamics.
  • A key observation is the dynamic interplay between stable, folded states and transient, unfolded conformations.

Findings:

  • The catalytic efficiency of peroxiredoxins is significantly modulated by the conformational flexibility between folded and locally unfolded states.
  • This tunable balance allows peroxiredoxins to adapt their activity in response to varying oxidative stress levels.
  • Specific structural transitions are critical for the peroxidase cycle.

Implications:

  • Understanding peroxiredoxin conformational dynamics offers new avenues for therapeutic interventions targeting oxidative stress-related diseases.
  • This knowledge enhances our comprehension of fundamental enzymatic mechanisms and protein regulation.
  • Further research into peroxiredoxin structure-function relationships could lead to novel biotechnological applications.