Gli1/DNA interaction is a druggable target for Hedgehog-dependent tumors
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Updated: Apr 19, 2026

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
Paola Infante1, Mattia Mori1, Romina Alfonsi2
1Center for Life NanoScience@Sapienza, Istituto Italiano di Tecnologia, Rome, Italy.
Abstract:
Hedgehog signaling is essential for tissue development and stemness, and its deregulation has been observed in many tumors. Aberrant activation of Hedgehog signaling is the result of genetic mutations of pathway components or other Smo-dependent or independent mechanisms, all triggering the downstream effector Gli1. For this reason, understanding the poorly elucidated mechanism of Gli1-mediated transcription allows to identify novel molecules blocking the pathway at a downstream level, representing a critical goal in tumor biology. Here, we clarify the structural requirements of the pathway effector Gli1 for binding to DNA and identify Glabrescione B as the first small molecule binding to Gli1 zinc finger and impairing Gli1 activity by interfering with its interaction with DNA. Remarkably, as a consequence of its robust inhibitory effect on Gli1 activity, Glabrescione B inhibited the growth of Hedgehog-dependent tumor cells in vitro and in vivo as well as the self-renewal ability and clonogenicity of tumor-derived stem cells. The identification of the structural requirements of Gli1/DNA interaction highlights their relevance for pharmacologic interference of Gli signaling.
Insights
Researchers identified Glabrescione B, a novel molecule that inhibits Gli1 activity by blocking its DNA binding. This finding offers a new strategy for targeting Hedgehog signaling in cancer treatment.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Hedgehog signaling is crucial for development and stemness, but its deregulation is implicated in various cancers.
- Aberrant Hedgehog signaling activation, often through the effector Gli1, drives tumor growth.
- Targeting downstream effectors like Gli1 is a critical goal for novel cancer therapies.
Purpose of the Study:
- To elucidate the structural basis of Gli1's DNA binding mechanism.
- To identify small molecules that can inhibit Gli1 activity at a downstream level.
- To evaluate the therapeutic potential of such inhibitors in Hedgehog-dependent tumors.
Main Methods:
- Structural analysis of Gli1 for DNA interaction.
- Screening for small molecules that bind to Gli1's zinc finger domain.
- In vitro and in vivo studies on cancer cell growth and stem cell properties.
- Assessment of Glabrescione B's effect on Gli1-DNA interaction.
Main Results:
- The structural requirements for Gli1 binding to DNA were clarified.
- Glabrescione B was identified as the first small molecule to bind Gli1's zinc finger.
- Glabrescione B effectively inhibits Gli1 activity by disrupting its DNA interaction.
- Glabrescione B demonstrated potent inhibition of Hedgehog-dependent tumor cell growth and self-renewal in vitro and in vivo.
Conclusions:
- Understanding Gli1 structural requirements enables targeted pharmacologic interference.
- Glabrescione B represents a promising therapeutic agent for blocking aberrant Hedgehog signaling.
- Targeting Gli1-DNA interaction offers a novel strategy for cancer treatment.
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