Related Experiment Video
Updated: Apr 19, 2026

Method for Identifying Small Molecule Inhibitors of the Protein-protein Interaction Between HCN1 and TRIP8b
Published on: November 11, 2016
Small Molecule, NSC95397, Inhibits the CtBP1-Protein Partner Interaction and CtBP1-Mediated Transcriptional
Melanie A Blevins1, Jennifer Kouznetsova2, Aaron B Krueger1
1Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA.
Abstract:
Carboxyl-terminal binding protein (CtBP) is a transcriptional corepressor that suppresses multiple proapoptotic and epithelial genes. CtBP is overexpressed in many human cancers, and its overexpression increases stem cell-like features, epithelial-mesenchymal transition, and cancer cell survival. Knockdown of CtBP also increases apoptosis independent of p53 in cell culture. Therefore, targeting CtBP with small molecules that disrupt its interaction with transcription factor partners may be an effective cancer therapy. To elicit its corepressing effect, CtBP binds to a conserved peptide motif in each transcription factor partner. We developed an AlphaScreen high-throughput screening assay to monitor the interaction between CtBP and E1A (which mimics the interaction between CtBP and its transcriptional partners). We screened the LOPAC library of 1280 bioactive compounds and identified NSC95397, which inhibits the CtBP-E1A interaction (IC50 = 2.9 µM). The inhibitory activity of NSC95397 was confirmed using two secondary assays and a counterscreen. NSC95397 also behaved as a weak substrate of CtBP dehydrogenase activity and did not inhibit another dehydrogenase, lactase dehydrogenase. Finally, NSC95397 was able to disrupt CtBP-mediated transcriptional repression of a target gene. These studies present a new possibility for the development of a therapeutic agent targeting tumors through disrupting the CtBP transcriptional complex.
Insights
Carboxyl-terminal binding protein (CtBP) is a cancer-promoting factor. Researchers identified a compound, NSC95397, that inhibits CtBP activity, offering a potential new cancer therapy by disrupting cancer cell survival mechanisms.
Area of Science:
- Molecular Biology
- Cancer Research
- Drug Discovery
Background:
- Carboxyl-terminal binding protein (CtBP) is a transcriptional corepressor overexpressed in many human cancers.
- CtBP overexpression promotes cancer progression by enhancing stem cell-like features, epithelial-mesenchymal transition, and cell survival.
- CtBP knockdown induces apoptosis, suggesting its potential as a therapeutic target.
Purpose of the Study:
- To identify small molecules that inhibit the interaction between CtBP and its transcriptional partners.
- To explore the potential of disrupting the CtBP transcriptional complex as a cancer therapy.
Main Methods:
- Development of an AlphaScreen high-throughput screening assay to monitor CtBP-E1A interaction.
- Screening of the LOPAC library of 1280 bioactive compounds.
- Confirmation of inhibitory activity using secondary assays and a counterscreen.
- Assessment of NSC95397's effect on CtBP-mediated transcriptional repression.
Main Results:
- Identification of NSC95397 as an inhibitor of the CtBP-E1A interaction with an IC50 of 2.9 µM.
- Confirmation of NSC95397's inhibitory activity and specificity.
- Demonstration that NSC95397 disrupts CtBP-mediated transcriptional repression of a target gene.
Conclusions:
- NSC95397 is a novel inhibitor of the CtBP transcriptional complex.
- Disrupting the CtBP transcriptional complex presents a promising strategy for cancer therapy.
- Further development of NSC95397 or similar compounds could lead to new anti-cancer agents.
Related Concept Videos
Eukaryotic Transcription Inhibitors
Eukaryotic transcription inhibitors usually contain two distinct domains, a...
Co-activators and Co-repressors
Inhibition of Cdk Activity
Inhibition of CDK Activity
Regulation of Nuclear Protein Sorting
Cis-regulatory Sequences

