Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

415
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
415
One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation01:24

One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation

1.5K
This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
1.5K
Reduced Mass Coordinates: Isolated Two-body Problem01:12

Reduced Mass Coordinates: Isolated Two-body Problem

2.7K
In classical mechanics, the two-body problem is one of the fundamental problems describing the motion of two interacting bodies under gravity or any other central force. When considering the motion of two bodies, one of the most important concepts is the reduced mass coordinates, a quantity that allows the two-body problem to be solved like a single-body problem. In these circumstances, it is assumed that a single body with reduced mass revolves around another body fixed in a position with an...
2.7K
State Space Representation01:27

State Space Representation

754
The frequency-domain technique, commonly used in analyzing and designing feedback control systems, is effective for linear, time-invariant systems. However, it falls short when dealing with nonlinear, time-varying, and multiple-input multiple-output systems. The time-domain or state-space approach addresses these limitations by utilizing state variables to construct simultaneous, first-order differential equations, known as state equations, for an nth-order system.
Consider an RLC circuit, a...
754
Area Computation by the Alternative Coordinate Method01:24

Area Computation by the Alternative Coordinate Method

826
The alternative coordinate method, also known as the Shoelace Formula, is a technique for determining the area of a traverse using Cartesian coordinates. This method relies on the sequential arrangement of x and y coordinates for each point of the shape, ensuring accuracy and ease of application.In this approach, each corner's x and y coordinates are listed as fractions, with the x-coordinate as the numerator and the y-coordinate as the denominator. These coordinates are arranged sequentially...
826

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

High-performance QM/MM Enhanced Sampling Molecular Dynamics Simulations with GENESIS SPDYN and QSimulate-QM.

Journal of chemical theory and computation·2025
Same author

Numerically stable resonating Hartree-Fock.

The Journal of chemical physics·2025
Same author

Converging Time-Dependent Density Functional Theory Calculations in Five Iterations with Minimal Auxiliary Preconditioning.

Journal of chemical theory and computation·2024
Same author

Ultrafast photochemistry and electron diffraction for cyclobutanone in the S2 state: Surface hopping with time-dependent density functional theory.

The Journal of chemical physics·2024
Same author

Fast Emulation of Fermionic Circuits with Matrix Product States.

Journal of chemical theory and computation·2024
Same author

TURBOMOLE: Today and Tomorrow.

Journal of chemical theory and computation·2023
Same journal

Quantum simulation of alignment dependent differential cross sections in co-propagating molecular beams at cold collision energies.

The Journal of chemical physics·2026
Same journal

Non-additive ion effects on the coil-globule equilibrium of a generic polymer in aqueous salt solutions.

The Journal of chemical physics·2026
Same journal

Insights into the unexpected small reduction of the temperature of maximum density of water by lithium chloride addition.

The Journal of chemical physics·2026
Same journal

Optical frequency comb double-resonance spectroscopy of the 9030-9175 cm-1 states of ethylene.

The Journal of chemical physics·2026
Same journal

Time reversal breaking of colloidal particles in cells.

The Journal of chemical physics·2026
Same journal

Photodynamics of amino acids under UV excitation: Extraterrestrial amino acids.

The Journal of chemical physics·2026
See all related articles

Related Experiment Video

Updated: Apr 19, 2026

Spatial Separation of Molecular Conformers and Clusters
10:37

Spatial Separation of Molecular Conformers and Clusters

Published on: January 9, 2014

11.9K

Communication: Active space decomposition with multiple sites: density matrix renormalization group algorithm.

Shane M Parker1, Toru Shiozaki1

  • 1Department of Chemistry, Northwestern University, 2145 Sheridan Rd., Evanston, Illinois 60208, USA.

The Journal of Chemical Physics
|December 8, 2014
PubMed
Summary
This summary is machine-generated.

We extended the active space decomposition method to multiple active sites using the density matrix renormalization group algorithm. This approach enables highly accurate calculations for complex molecular systems.

More Related Videos

Author Spotlight: Optimizing Cryo-EM Analysis with CryoSieve for Enhanced Particle Selection Efficiency
06:41

Author Spotlight: Optimizing Cryo-EM Analysis with CryoSieve for Enhanced Particle Selection Efficiency

Published on: May 10, 2024

2.8K
Density Gradient Multilayered Polymerization DGMP: A Novel Technique for Creating Multi-compartment, Customizable Scaffolds for Tissue Engineering
12:54

Density Gradient Multilayered Polymerization DGMP: A Novel Technique for Creating Multi-compartment, Customizable Scaffolds for Tissue Engineering

Published on: February 12, 2013

13.0K

Related Experiment Videos

Last Updated: Apr 19, 2026

Spatial Separation of Molecular Conformers and Clusters
10:37

Spatial Separation of Molecular Conformers and Clusters

Published on: January 9, 2014

11.9K
Author Spotlight: Optimizing Cryo-EM Analysis with CryoSieve for Enhanced Particle Selection Efficiency
06:41

Author Spotlight: Optimizing Cryo-EM Analysis with CryoSieve for Enhanced Particle Selection Efficiency

Published on: May 10, 2024

2.8K
Density Gradient Multilayered Polymerization DGMP: A Novel Technique for Creating Multi-compartment, Customizable Scaffolds for Tissue Engineering
12:54

Density Gradient Multilayered Polymerization DGMP: A Novel Technique for Creating Multi-compartment, Customizable Scaffolds for Tissue Engineering

Published on: February 12, 2013

13.0K

Area of Science:

  • Quantum chemistry
  • Computational physics
  • Materials science

Background:

  • The active space decomposition method is a computational technique for simplifying electronic structure calculations.
  • Accurate modeling of electron correlation is crucial for understanding molecular properties.
  • Extending existing methods to handle more complex systems is an ongoing challenge.

Purpose of the Study:

  • To generalize the active space decomposition method for systems with more than two active sites.
  • To investigate the efficiency and accuracy of the extended method using the density matrix renormalization group algorithm.
  • To assess the method's performance on realistic molecular models.

Main Methods:

  • Extension of the active space decomposition method to multiple active sites.
  • Utilizing the density matrix renormalization group (DMRG) algorithm for electron correlation.
  • Employing complete or restricted active-space wave functions for fragment descriptions.
  • Numerical calculations on benzene pentamer and perylene diimide trimer models.

Main Results:

  • The extended method demonstrates a near-exponential decrease in truncation errors with an increasing number of renormalization states (M).
  • Numerically exact calculations (within a few μE(h)) were achieved with M = 128 for both benzene pentamer and perylene diimide trimer.
  • The rapid convergence is attributed to the targeted application of renormalization steps to interfragment electron correlation.

Conclusions:

  • The generalized active space decomposition method is highly effective for accurate electronic structure calculations of complex molecules.
  • The density matrix renormalization group algorithm provides efficient and accurate treatment of interfragment electron correlation.
  • This method offers a promising pathway for computationally exact studies of large molecular systems.