Related Experiment Video
Updated: Apr 19, 2026

Primer Extension Capture: Targeted Sequence Retrieval from Heavily Degraded DNA Sources
Published on: September 3, 2009
Structural conservation despite huge sequence diversity allows EPCR binding by the PfEMP1 family implicated in severe
Clinton K Y Lau1, Louise Turner2, Jakob S Jespersen2
1Department of Biochemistry, University of Oxford, South Parks Road, OX1 3QU Oxford, UK.
Abstract:
The PfEMP1 family of surface proteins is central for Plasmodium falciparum virulence and must retain the ability to bind to host receptors while also diversifying to aid immune evasion. The interaction between CIDRα1 domains of PfEMP1 and endothelial protein C receptor (EPCR) is associated with severe childhood malaria. We combine crystal structures of CIDRα1:EPCR complexes with analysis of 885 CIDRα1 sequences, showing that the EPCR-binding surfaces of CIDRα1 domains are conserved in shape and bonding potential, despite dramatic sequence diversity. Additionally, these domains mimic features of the natural EPCR ligand and can block this ligand interaction. Using peptides corresponding to the EPCR-binding region, antibodies can be purified from individuals in malaria-endemic regions that block EPCR binding of diverse CIDRα1 variants. This highlights the extent to which such a surface protein family can diversify while maintaining ligand-binding capacity and identifies features that should be mimicked in immunogens to prevent EPCR binding.
Insights
Plasmodium falciparum surface proteins (PfEMP1) diversify for immune evasion but maintain EPCR binding for severe malaria. Antibodies targeting conserved EPCR-binding regions can block this interaction, offering a potential therapeutic strategy.
Area of Science:
- Malariology
- Structural Biology
- Immunology
Background:
- The Plasmodium falciparum surface protein family PfEMP1 is crucial for malaria parasite virulence.
- PfEMP1 interaction with host endothelial protein C receptor (EPCR) is linked to severe childhood malaria.
- PfEMP1 must balance immune evasion through diversification with essential host receptor binding.
Purpose of the Study:
- To investigate the structural basis of CIDRα1 domains within PfEMP1 binding to EPCR.
- To understand how sequence diversity in CIDRα1 domains affects EPCR binding and immune evasion.
- To identify conserved features for potential therapeutic interventions against severe malaria.
Main Methods:
- X-ray crystallography of CIDRα1:EPCR complexes.
- Sequence analysis of 885 CIDRα1 domains.
- Functional assays using EPCR-binding peptides and antibodies.
Main Results:
- EPCR-binding surfaces of CIDRα1 domains show conserved shape and bonding potential despite sequence variation.
- CIDRα1 domains mimic natural EPCR ligands and can block their interaction.
- Antibodies from malaria-endemic individuals targeting EPCR-binding peptides block diverse PfEMP1 variants.
Conclusions:
- PfEMP1 diversification is constrained by conserved EPCR-binding surfaces.
- The EPCR-binding interface represents a vulnerable target for malaria control.
- Conserved structural features can be exploited to develop broadly protective immunogens against severe malaria.
Related Concept Videos
Conserved Binding Sites
Binding sites are often located in large pockets, and if their location on a protein’s surface is unknown, it can be predicted using various approaches. The energetic method computationally...
Multi-species Conserved Sequences
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Conservative Site-specific Recombination and Phase Variation
The recognition sites for Cre recombinase called LoxP...
Conservation of Protein Domains Over Different Proteins
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...

