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Phylogeny, identification and nomenclature of the genus Aspergillus
R A Samson1, C M Visagie1, J Houbraken1
1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands.
Abstract:
Aspergillus comprises a diverse group of species based on morphological, physiological and phylogenetic characters, which significantly impact biotechnology, food production, indoor environments and human health. Aspergillus was traditionally associated with nine teleomorph genera, but phylogenetic data suggest that together with genera such as Polypaecilum, Phialosimplex, Dichotomomyces and Cristaspora, Aspergillus forms a monophyletic clade closely related to Penicillium. Changes in the International Code of Nomenclature for algae, fungi and plants resulted in the move to one name per species, meaning that a decision had to be made whether to keep Aspergillus as one big genus or to split it into several smaller genera. The International Commission of Penicillium and Aspergillus decided to keep Aspergillus instead of using smaller genera. In this paper, we present the arguments for this decision. We introduce new combinations for accepted species presently lacking an Aspergillus name and provide an updated accepted species list for the genus, now containing 339 species. To add to the scientific value of the list, we include information about living ex-type culture collection numbers and GenBank accession numbers for available representative ITS, calmodulin, β-tubulin and RPB2 sequences. In addition, we recommend a standard working technique for Aspergillus and propose calmodulin as a secondary identification marker.
Insights
The Aspergillus genus remains unified, preserving 339 species and establishing standardized identification methods. This decision impacts biotechnology, food safety, and health by clarifying fungal taxonomy.
Area of Science:
- Mycology
- Fungal Taxonomy
- Molecular Phylogenetics
Background:
- The genus Aspergillus encompasses diverse species crucial for biotechnology, food production, and human health.
- Phylogenetic analyses indicate Aspergillus forms a monophyletic clade with related genera, necessitating taxonomic reevaluation.
- The "one name per species" policy prompted a decision on whether to maintain Aspergillus as a single genus or subdivide it.
Purpose of the Study:
- To present the rationale for retaining Aspergillus as a single, large genus.
- To provide an updated list of accepted Aspergillus species, including new combinations.
- To offer standardized working techniques and genetic markers for Aspergillus identification.
Main Methods:
- Phylogenetic analysis of morphological, physiological, and molecular data.
- Review of nomenclature codes and recommendations from the International Commission of Penicillium and Aspergillus.
- Compilation of an updated species list with ex-type culture collection and GenBank accession numbers.
Main Results:
- The International Commission of Penicillium and Aspergillus decided to maintain Aspergillus as a single genus.
- The updated Aspergillus genus list now includes 339 accepted species.
- New combinations were introduced for species lacking an Aspergillus name, and genetic markers (ITS, calmodulin, β-tubulin, RPB2) were cataloged.
Conclusions:
- Maintaining Aspergillus as a unified genus simplifies fungal taxonomy and its practical applications.
- The updated species list and associated genetic data provide a valuable resource for researchers.
- Calmodulin is proposed as a secondary marker to enhance Aspergillus species identification.
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