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Updated: Apr 19, 2026

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Genome evolution in maize: from genomes back to genes.

James C Schnable1

  • 1Department of Agronomy and Horticulture, University of Nebraska, Lincoln, Nebraska 68583;

Annual Review of Plant Biology
|December 11, 2014
PubMed
Summary

Maize, a vital grain crop and model plant genetics system, reveals that fewer genes significantly impact traits than previously thought. Syntenic conservation is a key, underemphasized marker for gene function.

Keywords:
Poaceaecomparative genomicsgene contentgenome evolutionmaize

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Area of Science:

  • Plant genetics
  • Genomics
  • Quantitative genetics

Background:

  • Maize (Zea mays) is a globally significant grain crop, providing essential calories worldwide.
  • It serves as a foundational model organism in plant genetics and cytogenetics research.
  • Extensive genetic studies in maize offer insights into gene-phenotype relationships.

Purpose of the Study:

  • To investigate the characteristics of genes influencing phenotypes in maize.
  • To differentiate functionally significant genes from other genomic sequences.
  • To evaluate the role of syntenic conservation in identifying gene function.

Main Methods:

  • Analysis of historical genetic data in maize.
  • Integration of modern genomic and quantitative genetic datasets.
  • Comparative analysis of gene sequences and their phenotypic effects.

Main Results:

  • The number of genes with substantial phenotypic impact may be lower than current molecular definitions suggest.
  • Many plant genome sequences are not easily distinguishable by molecular data alone.
  • Syntenic conservation is an underutilized indicator of gene function.

Conclusions:

  • Re-evaluation of gene definitions in plants is needed based on functional impact.
  • Syntenic conservation offers a valuable, yet underemphasized, approach for functional genomics in maize and other plants.