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Updated: Apr 19, 2026

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR RS-PCR
Published on: November 4, 2016
Phenotypic and molecular characterization of nosocomial K. pneumoniae isolates by ribotyping
Shamweel Ahmad1, Ashraf Abulhamd1
1Department of Medical Laboratory Sciences, College of Medical Sciences, Salman Bin AbdulAziz University, Saudi Arabia.
Purpose:
To characterize clinical isolates of Klebsiella pneumoniae by phenotypic and genotypic methods.
Material/Methods:
Over a 12-month period, 52 isolates of K. pneumoniae were isolated. Of these 52 isolates, 7 were isolated over a period of 21 days from a suspected outbreak in the Neonatal Intensive Care Unit (NICU) and 45 from sporadic cases occurring in different wards of hospital were analysed.
Results:
The prevalence of K. pneumoniae isolates was 4% (52/1295). Quinolones, aztreonam and amikacin showed the greatest efficacy showing >85% sensitivity. Of the 52 isolates of K. pneumoniae, 8 (15.4%) isolates were positive for ESBL-production. Among the ESBL-producing K. pneumoniae, two out of 8 (25%) and 6 out of 8 (75%) were positive for (bla)SHV and (bla)CTX-M genes respectively. Ribotyping identified 30 distinct ribogroups among 52 isolates evaluated. Seven NICU outbreak isolates were divided into 2 ribotypes, as many as 6 belonged to one ribotype while one isolate which was isolated a week later was of a different ribotype, indicating the termination of the outbreak in the NICU. The outbreak in the NICU thus, was shown to have been caused by a single clone.
Conclusions:
A high discriminatory power, ease of interpretation coupled with excellent reproducibility and stability make ribotyping a very useful technique for investigating the molecular epidemiology of nosocomial infections caused by K. pneumoniae. A regular surveillance of hospital associated infections including monitoring antibiotic sensitivity pattern of K. pneumoniae, ESBL-production and molecular characterization is mandatory to control the spread of multidrug-resistant and ESBL-producing K. pneumoniae and for epidemiological purposes especially in outbreak situations.
Insights
This study characterized Klebsiella pneumoniae clinical isolates using phenotypic and genotypic methods. Ribotyping proved effective in tracing a Neonatal Intensive Care Unit (NICU) outbreak to a single clone, highlighting its utility in molecular epidemiology.
Area of Science:
- Clinical microbiology
- Molecular epidemiology
- Infectious diseases
Background:
- Klebsiella pneumoniae is a significant cause of nosocomial infections.
- Understanding the molecular epidemiology of K. pneumoniae is crucial for controlling outbreaks.
Purpose of the Study:
- To characterize clinical isolates of Klebsiella pneumoniae using phenotypic and genotypic methods.
- To investigate a suspected outbreak in a Neonatal Intensive Care Unit (NICU).
Main Methods:
- Phenotypic characterization of 52 K. pneumoniae isolates.
- Genotypic characterization including ESBL-gene detection and ribotyping.
- Analysis of isolates from sporadic cases and a suspected NICU outbreak.
Main Results:
- K. pneumoniae prevalence was 4% (52/1295).
- 8 (15.4%) isolates were ESBL-producers, with (bla)SHV and (bla)CTX-M genes detected.
- Ribotyping identified 30 ribogroups; NICU outbreak isolates belonged to 2 ribotypes, indicating a single-clone origin.
Conclusions:
- Ribotyping is a valuable tool for molecular epidemiology of K. pneumoniae nosocomial infections due to its discriminatory power and reproducibility.
- Regular surveillance of antibiotic sensitivity, ESBL-production, and molecular characterization is essential for controlling multidrug-resistant K. pneumoniae and for epidemiological purposes, especially during outbreaks.
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