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Updated: Apr 19, 2026

Glutamine Flux Imaging Using Genetically Encoded Sensors
Published on: July 31, 2014
Npr2 inhibits TORC1 to prevent inappropriate utilization of glutamine for biosynthesis of nitrogen-containing
Sunil Laxman1, Benjamin M Sutter1, Lei Shi1
1Department of Biochemistry, The University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9038, USA.
Abstract:
Cells must be capable of switching between growth and autophagy in unpredictable nutrient environments. The conserved Npr2 protein complex (comprising Iml1, Npr2, and Npr3; also called SEACIT) inhibits target of rapamycin complex 1 (TORC1) kinase signaling, which inhibits autophagy in nutrient-rich conditions. In yeast cultured in media with nutrient limitations that promote autophagy and inhibit growth, loss of Npr2 enables cells to bypass autophagy and proliferate. We determined that Npr2-deficient yeast had a metabolic state distinct from that of wild-type yeast when grown in minimal media containing ammonium as a nitrogen source and a nonfermentable carbon source (lactate). Unlike wild-type yeast, which accumulated glutamine, Npr2-deficient yeast metabolized glutamine into nitrogen-containing metabolites and maintained a high concentration of S-adenosyl methionine (SAM). Moreover, in wild-type yeast grown in these nutrient-limited conditions, supplementation with methionine stimulated glutamine consumption for synthesis of nitrogenous metabolites, demonstrating integration of a sulfur-containing amino acid cue and nitrogen utilization. These data revealed the metabolic basis by which the Npr2 complex regulates cellular homeostasis and demonstrated a key function for TORC1 in regulating the synthesis and utilization of glutamine as a nitrogen source.
Insights
The Npr2 protein complex regulates cell growth and autophagy by controlling nutrient utilization. Loss of Npr2 in yeast alters metabolism, enabling proliferation by affecting glutamine and S-adenosyl methionine (SAM) levels.
Area of Science:
- Cell Biology
- Metabolic Regulation
- Molecular Biology
Background:
- Cells must balance growth and autophagy in response to nutrient availability.
- The Npr2 protein complex (Iml1, Npr2, Npr3; SEACIT) inhibits target of rapamycin complex 1 (TORC1) signaling, suppressing autophagy in nutrient-rich conditions.
- Loss of Npr2 allows yeast to bypass autophagy and proliferate under nutrient limitations.
Purpose of the Study:
- To investigate the distinct metabolic state of Npr2-deficient yeast.
- To elucidate the role of the Npr2 complex in cellular homeostasis and nutrient utilization.
- To understand the integration of nutrient cues and metabolic pathways.
Main Methods:
- Culturing wild-type and Npr2-deficient yeast in minimal media with ammonium and lactate.
- Metabolomic analysis to compare intracellular metabolite concentrations.
- Supplementation experiments with methionine to assess its impact on nutrient utilization.
Main Results:
- Npr2-deficient yeast exhibited a unique metabolic profile compared to wild-type.
- Npr2-deficient yeast metabolized glutamine into nitrogenous metabolites and maintained high S-adenosyl methionine (SAM) levels.
- Methionine supplementation in wild-type yeast stimulated glutamine consumption, indicating integrated nutrient signaling.
Conclusions:
- The Npr2 complex regulates cellular homeostasis through metabolic control, particularly glutamine utilization.
- TORC1 plays a crucial role in managing glutamine synthesis and consumption as a nitrogen source.
- This study reveals the metabolic underpinnings of the Npr2 complex's function in nutrient adaptation.
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