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RNA Splicing01:32

RNA Splicing

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Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
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RNA Splicing01:32

RNA Splicing

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Exon Recombination02:32

Exon Recombination

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The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
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Alternative RNA Splicing02:18

Alternative RNA Splicing

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Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
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Alternative RNA Splicing02:18

Alternative RNA Splicing

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Pre-mRNA Processing: RNA Splicing

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Related Experiment Video

Updated: Apr 19, 2026

ACT1-CUP1 Assays Determine the Substrate-Specific Sensitivities of Spliceosomal Mutants in Budding Yeast
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ACT1-CUP1 Assays Determine the Substrate-Specific Sensitivities of Spliceosomal Mutants in Budding Yeast

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Exon circularization requires canonical splice signals.

Stefan Starke1, Isabelle Jost1, Oliver Rossbach1

  • 1Institute of Biochemistry, University of Giessen, Heinrich-Buff-Ring 58, 35392 Giessen, Germany.

Cell Reports
|December 29, 2014
PubMed
Summary

Circular RNAs (circRNAs) exhibit cell-type-specific expression and are formed via an alternative splicing mechanism. The canonical spliceosome machinery is crucial for biogenesis of these abundant noncoding RNAs.

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Area of Science:

  • Molecular Biology
  • Genetics
  • RNA Biology

Background:

  • Circular RNAs (circRNAs) are a prevalent class of noncoding RNAs in eukaryotes, arising from pre-mRNA splicing.
  • Their biogenesis and regulatory roles are areas of active investigation in molecular biology.

Purpose of the Study:

  • To investigate the cell-type-specific expression of circRNAs.
  • To elucidate the molecular mechanisms governing circRNA biogenesis.
  • To determine the sequence and structural requirements for circRNA formation.

Main Methods:

  • Northern blot analysis combined with RNase H cleavage to confirm circular RNA structure.
  • Minigene assays using sequences from natural circRNAs to study processing.
  • Splice inhibitor assays to assess the role of the spliceosome.

Main Results:

  • Demonstrated cell-type-specific expression for 15 analyzed circRNAs.
  • Confirmed the circular configuration of LPAR1 and HIPK3 circRNAs.
  • Identified that canonical splice sites are essential for circRNA formation, with flanking intron structures influencing efficiency.
  • Found no specific circRNA exon sequence requirement.

Conclusions:

  • CircRNA biogenesis relies on the canonical spliceosomal machinery, representing an alternative splicing pathway.
  • The findings provide insights into the regulatory mechanisms of circRNA production.
  • This study contributes to understanding the diverse roles of noncoding RNAs in gene regulation.