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Identification of Cyclin-dependent Kinase 1 Specific Phosphorylation Sites by an In Vitro Kinase Assay
Published on: May 3, 2018
Cyclin E-CDK2 protein phosphorylates plant homeodomain finger protein 8 (PHF8) and regulates its function in the cell
Liping Sun1, Yan Huang1, Qian Wei1
1From the Chinese Academy of Sciences Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China, the University of the Chinese Academy of Sciences, Beijing 100101, China, and.
Abstract:
Cyclin E-CDK2 is a key regulator in G1/S transition. Previously, we identified a number of CDK2-interacting proteins, including PHF8 (plant homeodomain finger protein 8). In this report, we confirmed that PHF8 is a novel cyclin E-CDK2 substrate. By taking the approach of mass spectrometry, we identified that PHF8 Ser-844 is phosphorylated by cyclin E-CDK2. Immunoblotting analysis indicated that WT PHF8 demethylates histone H3K9me2 more efficiently than the cyclin E-CDK2 phosphorylation-deficient PHF8-S844A mutant. Furthermore, flow cytometry analysis showed that WT PHF8 promotes S phase progression more robustly than PHF8-S844A. Real-time PCR results demonstrated that PHF8 increases transcription of cyclin E, E2F3, and E2F7 to significantly higher levels compared with PHF8-S844A. Further analysis by ChIP assay indicated that PHF8 binds to the cyclin E promoter stronger than PHF8-S844A and reduces the H3K9me2 level at the cyclin E promoter more efficiently than PHF8-S844A. In addition, we found that cyclin E-CDK2-mediated phosphorylation of PHF8 Ser-844 promotes PHF8-dependent rRNA transcription in luciferase reporter assays and real-time PCR. Taken together, these results indicate that cyclin E-CDK2 phosphorylates PHF8 to stimulate its demethylase activity to promote rRNA transcription and cell cycle progression.
Insights
Cyclin E-CDK2 phosphorylates PHF8 at Ser-844, enhancing its demethylase activity. This promotes rRNA transcription and cell cycle progression, revealing a new regulatory mechanism for G1/S transition.
Area of Science:
- Molecular Biology
- Cell Cycle Regulation
- Epigenetics
Background:
- Cyclin E-CDK2 is crucial for the G1/S phase transition.
- PHF8 (plant homeodomain finger protein 8) was previously identified as a CDK2-interacting protein.
Purpose of the Study:
- To investigate PHF8 as a novel substrate of cyclin E-CDK2.
- To elucidate the functional consequences of PHF8 phosphorylation by cyclin E-CDK2.
Main Methods:
- Mass spectrometry to identify phosphorylation sites.
- Immunoblotting and flow cytometry to assess protein function.
- Real-time PCR and ChIP assays to analyze gene transcription and promoter binding.
- Luciferase reporter assays for transcriptional activity.
Main Results:
- PHF8 Ser-844 was confirmed as a cyclin E-CDK2 phosphorylation site.
- Phosphorylation enhanced PHF8's histone H3K9me2 demethylase activity.
- WT PHF8 promoted S phase progression and transcription of cyclin E, E2F3, and E2F7 more effectively than the S844A mutant.
- Phosphorylation stimulated PHF8-dependent rRNA transcription.
Conclusions:
- Cyclin E-CDK2-mediated phosphorylation of PHF8 at Ser-844 activates its demethylase activity.
- This activation promotes rRNA transcription and facilitates cell cycle progression.
- PHF8 is a key effector linking cyclin E-CDK2 activity to gene expression and cell cycle control.
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