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Updated: Apr 19, 2026

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Oropharyngeal and nasal Staphylococcus aureus carriage by healthy children
Susanna Esposito1, Leonardo Terranova2, Alberto Zampiero3
1Department of Pathophysiology and Transplantation, Pediatric Highly Intensive Care Unit, Università degli Studi di Milano, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Via Commenda 9, 20122, Milano, Italy. susanna.esposito@unimi.it.
Insights
Oropharyngeal Staphylococcus aureus (S. aureus) carriage is common in healthy children, even without nasal colonization. Adding throat screening to nasal screening is crucial for accurately monitoring S. aureus circulation in communities.
Area of Science:
- Pediatric infectious diseases
- Microbiology
- Public health surveillance
Background:
- Healthy children are key reservoirs for respiratory pathogens.
- Understanding Staphylococcus aureus (S. aureus) circulation is vital for community health.
- Screening strategies in early life need evaluation for accurate pathogen estimates.
Purpose of the Study:
- To assess oropharyngeal and nasal S. aureus carriage in healthy children and adolescents (aged 6-17).
- To determine the prevalence and patterns of S. aureus colonization in different anatomical sites.
- To inform optimal screening methods for S. aureus in pediatric populations.
Main Methods:
- Collected oropharyngeal and nasal samples from 497 healthy students (aged 6-17) in Milan, Italy.
- Utilized ESwab kits for sample collection and the RIDA®GENE MRSA system for S. aureus identification.
- Analyzed carriage rates, age-related trends, and agreement between nasal and oropharyngeal sites.
Main Results:
- S. aureus carriage identified in 53.1% of subjects (25.9% oropharyngeal, 39.2% nasal, 12.1% both).
- Oropharyngeal carriage increased with age, while nasal carriage decreased; low agreement between sites.
- Methicillin-resistant S. aureus (MRSA) was rare (0.6%), found only in nasal samples. No significant differences in risk factors were observed between carriers and non-carriers.
Conclusions:
- Oropharyngeal carriage of S. aureus, predominantly methicillin-sensitive strains, is frequent in healthy children.
- A significant proportion of children carry S. aureus in the oropharynx without concurrent nasal colonization.
- Integrating oropharyngeal screening with nasal screening is recommended for comprehensive S. aureus surveillance in the community.
Background:
As healthy children are the main reservoir of respiratory pathogens and the main cause of bacterial diffusion in the community, it could be interesting to investigate the type of screening that should be used during the early years of life in order to obtain a more precise estimate of Staphylococcus aureus circulation. The aim of this study was to evaluate oropharyngeal and nasal S. aureus carriage in otherwise healthy children and adolescents aged 6-17 years.
Methods:
The oropharyngeal and nasal samples were collected in December 2013 from 497 healthy students attending five randomly selected schools in Milan, Italy, using an ESwab kit, and S. aureus was identified using the RIDA®GENE methicillin-resistant S. aureus (MRSA) system.
Results:
Two hundred and sixty-four subjects (53.1%) were identified as S. aureus carriers: 129 (25.9%) oropharyngeal carriers and 195 (39.2%) nasal carriers, of whom 60 (12.1%) were both oropharyngeal and nasal carriers. Oropharyngeal carriage increased with age (p < 0.001), whereas nasal carriage decreased. There was little or no agreement between oropharyngeal and nasal carriage in any of the age groups. MRSA was identified in only three cases (0.6%), always in nasal samples. There were no differences between the carriers and non-carriers in terms of the distribution of age, gender, ethnicity, the number of siblings in the household, exposure to passive smoking, previous clinical history, allergic sensitisation, or previous influenza, pneumococcal and meningococcal vaccinations. The frequency of male children was higher among the subjects with positive nasal and oropharyngeal swabs (66.7%) than among those with positive oropharyngeal swabs alone (46.4%; p = 0.02).
Conclusions:
The oropharyngeal carriage of mainly methicillin-sensitive S. aureus is frequent in otherwise healthy children, including a relatively high proportion of those without nasal colonisation. These findings highlight the importance of adding throat to nasal screening when monitoring the circulation of S. aureus in the community.
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