Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving01:29

Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving

415
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
415
Block Diagram Reduction01:22

Block Diagram Reduction

678
The process of deriving the transfer function of a control system often involves reducing its block diagram to a single block. This simplification can be achieved through a series of strategic operations, including relocating branch points and comparators. These operations preserve the overall function of the system while allowing for easier manipulation and combination of blocks.
The first step in this process is the identification and relocation of a branch point. A branch point, where a...
678
Bacterial Translocation and Protein Secretion01:26

Bacterial Translocation and Protein Secretion

1.1K
Bacterial protein secretion involves translocation systems to ensure proteins reach their designated locations, including the plasma membrane, periplasm, outer membrane, or the external environment. These translocation systems are vital for bacterial physiology, supporting processes like membrane assembly, enzymatic activity in the periplasm, and interactions with the external environment. The division of labor between Sec and Tat pathways ensures efficiency in handling proteins with diverse...
1.1K
Linear Approximation in Time Domain01:21

Linear Approximation in Time Domain

431
Nonlinear systems often require sophisticated approaches for accurate modeling and analysis, with state-space representation being particularly effective. This method is especially useful for systems where variables and parameters vary with time or operating conditions, such as in a simple pendulum or a translational mechanical system with nonlinear springs.
For a simple pendulum with a mass evenly distributed along its length and the center of mass located at half the pendulum's length,...
431
State Space Representation01:27

State Space Representation

744
The frequency-domain technique, commonly used in analyzing and designing feedback control systems, is effective for linear, time-invariant systems. However, it falls short when dealing with nonlinear, time-varying, and multiple-input multiple-output systems. The time-domain or state-space approach addresses these limitations by utilizing state variables to construct simultaneous, first-order differential equations, known as state equations, for an nth-order system.
Consider an RLC circuit, a...
744
Improving Translational Accuracy02:07

Improving Translational Accuracy

15.7K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
15.7K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Pyridine-Bridged Axial Coordination Creates Electron-Deficient Co-N<sub>5</sub> Porphyrin Sites for Selective Photoelectrochemical CO<sub>2</sub> Reduction on Si Nanowires.

The journal of physical chemistry letters·2026
Same author

ILDR2 impairs antitumor surveillance by recruiting immunosuppressive CCR2<sup>+</sup> monocytes.

Biochemical and biophysical research communications·2026
Same author

Driving mechanisms of adaptive strategies and heavy metal remediation potential in Artemisia lavandulaefolia during succession of abandoned Pb-Zn mining areas.

Journal of environmental management·2026
Same author

Deciphering glutamine metabolic reprogramming: a novel therapeutic target ALDH18A1 in triple-negative breast cancer.

Scientific reports·2026
Same author

Fracture characteristics and failure mechanisms of coal-rock composites under complex true triaxial stress paths.

Scientific reports·2026
Same author

Unraveling the effector mechanism of citrulline on sow lactation and offspring growth: an integrative multi-omics analysis.

Journal of animal science and biotechnology·2026
Same journal

Quantum simulation of alignment dependent differential cross sections in co-propagating molecular beams at cold collision energies.

The Journal of chemical physics·2026
Same journal

Non-additive ion effects on the coil-globule equilibrium of a generic polymer in aqueous salt solutions.

The Journal of chemical physics·2026
Same journal

Insights into the unexpected small reduction of the temperature of maximum density of water by lithium chloride addition.

The Journal of chemical physics·2026
Same journal

Optical frequency comb double-resonance spectroscopy of the 9030-9175 cm-1 states of ethylene.

The Journal of chemical physics·2026
Same journal

Time reversal breaking of colloidal particles in cells.

The Journal of chemical physics·2026
Same journal

Photodynamics of amino acids under UV excitation: Extraterrestrial amino acids.

The Journal of chemical physics·2026
See all related articles

Related Experiment Video

Updated: Apr 19, 2026

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization
12:11

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization

Published on: February 27, 2020

7.4K

An efficient localization procedure for large systems using a sequential transformation strategy.

Chenyang Zhang1, Shuhua Li1

  • 1Key Laboratory of Mesoscopic Chemistry of Ministry of Education, School of Chemistry and Chemical Engineering, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing 210093, People's Republic of China.

The Journal of Chemical Physics
|January 3, 2015
PubMed
Summary
This summary is machine-generated.

A new fragment-based method efficiently computes localized molecular orbitals for large systems. This fast, non-iterative approach provides accurate results for both occupied and virtual orbitals.

More Related Videos

An Automated System for Sound Localization Testing in Hearing-Impaired Listeners
07:56

An Automated System for Sound Localization Testing in Hearing-Impaired Listeners

Published on: March 13, 2026

150
Localizing Function-specific Targets for Transcranial Magnetic Stimulation in the Absence of Navigation Equipment
09:30

Localizing Function-specific Targets for Transcranial Magnetic Stimulation in the Absence of Navigation Equipment

Published on: May 23, 2025

1.5K

Related Experiment Videos

Last Updated: Apr 19, 2026

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization
12:11

Simultaneous Affinity Enrichment of Two Post-Translational Modifications for Quantification and Site Localization

Published on: February 27, 2020

7.4K
An Automated System for Sound Localization Testing in Hearing-Impaired Listeners
07:56

An Automated System for Sound Localization Testing in Hearing-Impaired Listeners

Published on: March 13, 2026

150
Localizing Function-specific Targets for Transcranial Magnetic Stimulation in the Absence of Navigation Equipment
09:30

Localizing Function-specific Targets for Transcranial Magnetic Stimulation in the Absence of Navigation Equipment

Published on: May 23, 2025

1.5K

Area of Science:

  • Computational Chemistry
  • Quantum Chemistry
  • Theoretical Chemistry

Background:

  • Accurate molecular orbital calculations are crucial for understanding chemical systems.
  • Localizing molecular orbitals enhances interpretability and can improve computational efficiency.
  • Existing methods for large systems can be computationally intensive.

Purpose of the Study:

  • To develop a fast and efficient fragment-based top-down localization scheme.
  • To obtain occupied and virtual regionally localized molecular orbitals (RLMOs) for large systems.
  • To demonstrate the computational efficiency and accuracy of the new scheme.

Main Methods:

  • A fragment-based sequential transformation strategy is employed.
  • Singular value decomposition operations are utilized for RLMO construction.
  • The scheme is a non-iterative procedure with cubic computational scaling.

Main Results:

  • The developed scheme rapidly generates RLMOs for large molecular systems.
  • RLMOs exhibit locality comparable to conventional methods.
  • The approach is efficient for computing both occupied and virtual RLMOs.

Conclusions:

  • The fragment-based top-down localization scheme offers a computationally efficient solution for large systems.
  • This method provides accurate and localized molecular orbitals.
  • It is a valuable tool for theoretical and computational chemistry research.