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Comparing Copy Number Variations and SNPs02:26

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Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
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Bipolar disorder is a chronic mental health condition marked by significant mood fluctuations, including episodes of mania and depression. Elevated energy levels, heightened mood or irritability, impulsive behavior, reduced sleep needs, rapid speech, racing thoughts, inflated self-esteem, and distractibility characterize mania. Individuals with bipolar disorder often alternate between depressive and manic states, with periods of emotional stability lasting an average of six months to a year.
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A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
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Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants
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Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants

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Copy number variation in bipolar disorder.

E K Green1, E Rees2, J T R Walters2

  • 1School of Biomedical and Healthcare Sciences, Plymouth University Peninsula Schools of Medicine and Dentistry, Plymouth, UK.

Molecular Psychiatry
|January 7, 2015
PubMed
Summary
This summary is machine-generated.

Large copy number variants (CNVs) contribute to bipolar disorder (BD) risk, particularly duplications at 16p11.2. Very large CNVs play a lesser role in BD compared to schizophrenia (SZ).

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Area of Science:

  • Genetics
  • Neuroscience
  • Psychiatry

Background:

  • Large copy number variants (CNVs) are established schizophrenia (SZ) risk factors.
  • The role of CNVs in bipolar disorder (BD) remains less understood.
  • Previous studies indicate a potential genetic overlap between SZ and BD.

Purpose of the Study:

  • To investigate the occurrence and impact of CNVs in a large UK bipolar disorder sample.
  • To compare CNV frequencies in BD with existing SZ and control cohorts.
  • To identify specific CNV loci and gene regions associated with BD risk.

Main Methods:

  • Analysis of CNVs in 2591 UK BD patients.
  • Meta-analysis combining new BD data with 6882 SZ and 8842 control subjects.
  • Statistical testing for association of CNV loci with BD and SZ, including multiple-testing correction.

Main Results:

  • Three SZ-associated CNV loci showed evidence of contributing to BD risk: 1q21.1 duplications, 3q29 deletions, and 16p11.2 duplications.
  • 16p11.2 duplications survived multiple-testing correction.
  • Rare exonic CNVs were enriched in BD cases across 20 gene regions, but did not survive correction.
  • Very large CNVs (>500 kb), especially deletions >1 Mb, were significantly less common in BD than SZ.

Conclusions:

  • Specific CNV loci, previously linked to SZ, also confer risk for BD.
  • The genetic architecture of BD involves large CNVs, but to a lesser extent than SZ.
  • 16p11.2 duplications represent a significant recurrent CNV risk factor for BD.