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Updated: Apr 18, 2026

Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography
Published on: September 20, 2016
Expression, purification, crystallization, and preliminary X-ray crystallographic studies of the human adiponectin
Hiroaki Tanabe1, Kanna Motoyama, Mariko Ikeda
1RIKEN Systems and Structural Biology Center, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.
Abstract:
The adiponectin receptors (AdipoR1 and AdipoR2) are membrane proteins with seven transmembrane helices. These receptors regulate glucose and fatty acid metabolism, thereby ameliorating type 2 diabetes. The full-length human AdipoR1 and a series of N-terminally truncated mutants of human AdipoR1 and AdipoR2 were expressed in insect cells. In small-scale size exclusion chromatography, the truncated mutants AdipoR1Δ88 (residues 89-375) and AdipoR2Δ99 (residues 100-386) eluted mostly in the intact monodisperse state, while the others eluted primarily as aggregates. However, gel filtration chromatography of the large-scale preparation of the tag-affinity-purified AdipoR1Δ88 revealed the presence of an excessive amount of the aggregated state over the intact state. Since aggregation due to contaminating nucleic acids may have occurred during the sample concentration step, anion-exchange column chromatography was performed immediately after affinity chromatography, to separate the intact AdipoR1Δ88 from the aggregating species. The separated intact AdipoR1Δ88 did not undergo further aggregation, and was successfully purified to homogeneity by gel filtration chromatography. The purified AdipoR1Δ88 and AdipoR2Δ99 proteins were characterized by thermostability assays with 7-diethylamino-3-(4-maleimidophenyl)-4-methyl coumarin, thin layer chromatography of bound lipids, and surface plasmon resonance analysis of ligand binding, demonstrating their structural integrities. The AdipoR1Δ88 and AdipoR2Δ99 proteins were crystallized with the anti-AdipoR1 monoclonal antibody Fv fragment, by the lipidic mesophase method. X-ray diffraction data sets were obtained at resolutions of 2.8 and 2.4 Å, respectively.
Insights
Researchers purified adiponectin receptors (AdipoR1 and AdipoR2) for type 2 diabetes research. They developed a method to prevent protein aggregation, enabling structural analysis and crystallization for drug discovery.
Area of Science:
- Biochemistry
- Structural Biology
- Molecular Medicine
Background:
- Adiponectin receptors (AdipoR1, AdipoR2) are crucial for glucose and fatty acid metabolism, impacting type 2 diabetes.
- Understanding AdipoR structure is key to developing metabolic disease therapeutics.
Purpose of the Study:
- To develop a robust purification strategy for functional adiponectin receptor fragments.
- To enable structural determination of AdipoR1 and AdipoR2 for therapeutic targeting.
Main Methods:
- Expression of N-terminally truncated human AdipoR1 and AdipoR2 mutants in insect cells.
- Multi-step chromatography (affinity, anion-exchange, size exclusion) to purify AdipoR1Δ88 and AdipoR2Δ99.
- Characterization using thermostability assays, lipid binding analysis, SPR, and X-ray crystallography.
Main Results:
- Truncated mutants AdipoR1Δ88 and AdipoR2Δ99 were successfully purified to homogeneity, overcoming aggregation issues.
- Purified proteins demonstrated structural integrity via biophysical characterization.
- Crystallization of AdipoR1Δ88 and AdipoR2Δ99 was achieved using the lipidic mesophase method.
Conclusions:
- A refined purification protocol effectively yields stable, homogeneous adiponectin receptor fragments.
- The structural data obtained provides a foundation for designing novel type 2 diabetes therapies targeting adiponectin signaling.
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