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Updated: Apr 18, 2026

Live Cell Imaging of Early Autophagy Events: Omegasomes and Beyond
Published on: July 27, 2013
PI(5)P regulates autophagosome biogenesis
Mariella Vicinanza1, Viktor I Korolchuk1, Avraham Ashkenazi1
1Department of Medical Genetics, Cambridge Institute for Medical Research, Wellcome/MRC Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, UK.
Abstract:
Phosphatidylinositol 3-phosphate (PI(3)P), the product of class III PI3K VPS34, recruits specific autophagic effectors, like WIPI2, during the initial steps of autophagosome biogenesis and thereby regulates canonical autophagy. However, mammalian cells can produce autophagosomes through enigmatic noncanonical VPS34-independent pathways. Here we show that PI(5)P can regulate autophagy via PI(3)P effectors and thereby identify a mechanistic explanation for forms of noncanonical autophagy. PI(5)P synthesis by the phosphatidylinositol 5-kinase PIKfyve was required for autophagosome biogenesis, and it increased levels of PI(5)P, stimulated autophagy, and reduced the levels of autophagic substrates. Inactivation of VPS34 impaired recruitment of WIPI2 and DFCP1 to autophagic precursors, reduced ATG5-ATG12 conjugation, and compromised autophagosome formation. However, these phenotypes were rescued by PI(5)P in VPS34-inactivated cells. These findings provide a mechanistic framework for alternative VPS34-independent autophagy-initiating pathways, like glucose starvation, and unravel a cytoplasmic function for PI(5)P, which previously has been linked predominantly to nuclear roles.
Insights
Phosphatidylinositol 5-phosphate (PI(5)P) drives noncanonical autophagy by influencing PI(3)P effectors. This reveals a novel cytoplasmic role for PI(5)P and explains VPS34-independent autophagosome formation.
Area of Science:
- Cell Biology
- Molecular Biology
- Autophagy Research
Background:
- Canonical autophagy relies on phosphatidylinositol 3-phosphate (PI(3)P), produced by VPS34, to recruit effectors like WIPI2 for autophagosome biogenesis.
- Mammalian cells exhibit noncanonical autophagy pathways independent of VPS34, the mechanisms of which remain unclear.
Purpose of the Study:
- To elucidate the mechanism behind VPS34-independent autophagy.
- To identify a role for PI(5)P in regulating autophagy and autophagosome biogenesis.
Main Methods:
- Investigated the role of PI(5)P synthesis by PIKfyve in autophagosome biogenesis.
- Assessed the impact of VPS34 inactivation on autophagic markers and PI(5)P levels.
- Examined the rescue effects of PI(5)P on VPS34-deficient cells.
Main Results:
- PI(5)P synthesis was essential for autophagosome biogenesis, increasing PI(5)P levels and stimulating autophagy.
- VPS34 inactivation impaired autophagic precursor recruitment and autophagosome formation.
- Exogenous PI(5)P rescued the autophagy defects in VPS34-inactivated cells.
Conclusions:
- PI(5)P acts as a key regulator in noncanonical autophagy, potentially via PI(3)P effectors.
- This study provides a mechanistic explanation for VPS34-independent autophagy, such as during glucose starvation.
- Uncovered a novel cytoplasmic function for PI(5)P, expanding its known nuclear roles.
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