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Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing
Published on: August 25, 2018
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A framework for establishing predictive relationships between specific bacterial 16S rRNA sequence abundances and
Damian E Helbling1, David R Johnson2, Tae Kwon Lee3
1School of Civil and Environmental Engineering, Cornell University, Ithaca, NY, USA.
Water Research
|January 17, 2015
Summary
Wastewater treatment plant microbial communities vary in biotransformation rates. This study develops a framework linking bacterial 16S rRNA sequences to these rates, identifying key groups for predicting ammonia and micropollutant removal efficiency.
Area of Science:
- Environmental microbiology
- Biotechnology
- Molecular ecology
Background:
- Wastewater treatment plant (WWTP) microbial communities exhibit significant variability in substrate biotransformation rates.
- Taxonomic composition differences are potential predictors of these biotransformation rate variations.
Purpose of the Study:
- To develop a novel framework for predicting biotransformation rates based on bacterial 16S rRNA sequence abundances.
- To identify specific bacterial taxa that act as biomarkers for WWTP microbial activity.
Main Methods:
- Collected samples from ten WWTPs with diverse operational metrics.
- Measured in situ ammonia biotransformation rate constants.
- Analyzed 16S rRNA sequences and developed multivariate models linking sequence abundance to biotransformation rates.
- Extended the framework to predict micropollutant biotransformation rates.
Main Results:
- Over 80% of model scenarios yielded significant predictions of ammonia biotransformation rates using 16S rRNA sequences.
- Nitrosomonas and Nitrospira groups were consistently identified as key predictors for ammonia biotransformation.
- Specific phylogenetic groups were identified as robust biomarkers for the biotransformation of isoproturon, propachlor, ranitidine, and venlafaxine.
Conclusions:
- A predictive framework linking microbial taxonomy to biotransformation rates in WWTPs was successfully established.
- Identified bacterial groups serve as reliable biomarkers for predicting WWTP microbial community activity and efficiency.
- This approach advances tools for predicting WWTP performance based on microbial community composition.

