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Updated: Apr 18, 2026

Assessment of Cellular Bioenergetics in Mouse Hematopoietic Stem and Primitive Progenitor Cells using the Extracellular Flux Analyzer
Published on: September 24, 2021
Characterization of mitochondrial populations during stem cell differentiation
Petra Kerscher1, Blakely S Bussie, Katherine M DeSimone
1Department of Chemical Engineering, Auburn University, 212 Ross Hall, Auburn, AL, 36849, USA.
Mitochondrial Quantification using MATLAB (MQM) offers automated analysis of mitochondrial changes during human pluripotent stem cell (hPSC) differentiation into cardiomyocytes (SC-CMs). This tool provides unbiased, quantitative data on mitochondrial number, area, and location.
Area of Science:
- Cardiovascular Biology
- Mitochondrial Biology
- Stem Cell Research
Background:
- Mitochondrial dynamics are crucial in cardiac physiology and pathology.
- Current methods for assessing mitochondrial structure (number, morphology, location) are often qualitative and lack automation.
- Quantitative analysis tools are needed for precise evaluation of mitochondrial changes.
Purpose of the Study:
- To introduce Mitochondrial Quantification using MATLAB (MQM), a novel computer-based tool.
- To demonstrate MQM's utility in quantitatively analyzing mitochondrial parameters.
- To assess mitochondrial alterations during human pluripotent stem cell (hPSC) differentiation into cardiomyocytes (SC-CMs).
Main Methods:
- Development of MQM, a MATLAB-based software for automated mitochondrial analysis.
- Utilizing fluorescence microscopy to visualize labeled mitochondria in cells.
- Applying MQM to quantify mitochondrial number, area, and spatial distribution during hPSC-SC-CM differentiation.
Main Results:
- MQM provides automated, unbiased, and quantitative data on mitochondrial parameters.
- The tool efficiently analyzes mitochondrial number, area, and location.
- Demonstrated successful application of MQM in tracking mitochondrial changes during cardiac differentiation.
Conclusions:
- MQM is an effective tool for quantitative assessment of mitochondrial dynamics.
- This method facilitates objective analysis of mitochondrial changes in stem cell differentiation models.
- MQM aids in understanding human heart development through quantitative mitochondrial analysis.
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