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Noninvasive Sampling of Mucosal Lining Fluid for the Quantification of In Vivo Upper Airway Immune-mediator Levels
Published on: August 7, 2017
Dynamics of the nasal microbiota in infancy: a prospective cohort study
Moana Mika1, Ines Mack2, Insa Korten3
1Institute for Infectious Diseases, University of Bern, Bern, Switzerland; Graduate School for Cellular and Biomedical Sciences, University of Bern, Bern, Switzerland.
Insights
The infant upper respiratory tract microbiota changes significantly in the first year of life, with distinct early profiles and personalized, dynamic bacterial composition influenced by age and season.
Area of Science:
- Microbiology
- Immunology
- Pediatrics
Background:
- Understanding the upper respiratory tract microbiota in healthy infants is crucial for studying respiratory diseases.
- Early life is a critical period for immune system development and microbial colonization.
Purpose of the Study:
- To characterize the dynamics of the upper respiratory tract microbiota in healthy infants during their first year of life.
Main Methods:
- 16S rDNA pyrosequencing was used to analyze 872 nasal swabs from 47 infants.
- Samples were collected biweekly to capture dynamic changes.
Main Results:
- Bacterial density increased while diversity decreased within the first year.
- Distinct microbial profiles were observed in the first three months, with increased Staphlyococcaceae and Corynebacteriaceae.
- Microbiota composition varied seasonally and demonstrated personalized, dynamic changes over time.
Conclusions:
- Age and seasonality are key drivers of nasal microbiota composition in infants.
- The infant nasal microbiota is personalized yet dynamic, providing essential baseline data for future research and interventions.
Background:
Understanding the composition and dynamics of the upper respiratory tract microbiota in healthy infants is a prerequisite to investigate the role of the microbiota in patients with respiratory diseases. This is especially true in early life, when the immune system is in development.
Objective:
We sought to describe the dynamics of the upper respiratory tract microbiota in healthy infants within the first year of life.
Methods:
After exclusion of low-quality samples, microbiota characterization was performed by using 16S rDNA pyrosequencing of 872 nasal swabs collected biweekly from 47 unselected infants.
Results:
Bacterial density increased and diversity decreased within the first year of life (R(2) = 0.95 and 0.73, respectively). A distinct profile for the first 3 months of life was found with increased relative abundances of Staphlyococcaceae and Corynebacteriaceae (exponential decay: R(2) = 0.94 and 0.96, respectively). In addition, relative bacterial abundance and composition differed significantly from summer to winter months. The individual composition of the microbiota changed with increasing time intervals between samples and was best modeled by an exponential function (R(2) = 0.97). Within-subject dissimilarity in a 2-week time interval was consistently lower than that between subjects, indicating a personalized microbiota.
Conclusion:
This study reveals age and seasonality as major factors driving the composition of the nasal microbiota within the first year of life. A subject's microbiota is personalized but dynamic throughout the first year. These data are indispensable to interpretation of cross-sectional studies and investigation of the role of the microbiota in both healthy subjects and patients with respiratory diseases. They might also serve as a baseline for future intervention studies.
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