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An In Vitro Protocol for Evaluating MicroRNA Levels, Functions, and Associated Target Genes in Tumor Cells
Published on: May 21, 2019
Functional proteomics identifies miRNAs to target a p27/Myc/phospho-Rb signature in breast and ovarian cancer
E G Seviour1, V Sehgal1, Y Lu1
1Department of Systems Biology, UT MD Anderson Cancer Center, Houston, TX, USA.
Abstract:
The myc oncogene is overexpressed in almost half of all breast and ovarian cancers, but attempts at therapeutic interventions against myc have proven to be challenging. Myc regulates multiple biological processes, including the cell cycle, and as such is associated with cell proliferation and tumor progression. We identified a protein signature of high myc, low p27 and high phospho-Rb significantly correlated with poor patient survival in breast and ovarian cancers. Screening of a miRNA library by functional proteomics in multiple cell lines and integration of data from patient tumors revealed a panel of five microRNAs (miRNAs) (miR-124, miR-365, miR-34b*, miR-18a and miR-506) as potential tumor suppressors capable of reversing the p27/myc/phospho-Rb protein signature. Mechanistic studies revealed an RNA-activation function of miR-124 resulting in direct induction of p27 protein levels by binding to and inducing transcription on the p27 promoter region leading to a subsequent G1 arrest. Additionally, in vivo studies utilizing a xenograft model demonstrated that nanoparticle-mediated delivery of miR-124 could reduce tumor growth and sensitize cells to etoposide, suggesting a clinical application of miRNAs as therapeutics to target the functional effect of myc on tumor growth.
Insights
We identified five microRNAs (miRNAs) that can reverse a protein signature linked to poor survival in breast and ovarian cancers. miR-124 shows promise as a therapeutic agent to inhibit tumor growth.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The myc oncogene is frequently overexpressed in breast and ovarian cancers, driving tumor progression.
- Targeting myc therapeutically is challenging due to its role in multiple cellular processes.
- A specific protein signature (high myc, low p27, high phospho-Rb) correlates with poor patient survival.
Purpose of the Study:
- To identify microRNAs (miRNAs) capable of reversing the identified poor prognostic protein signature.
- To investigate the therapeutic potential of identified miRNAs in preclinical cancer models.
Main Methods:
- Functional proteomics screening of a miRNA library in cancer cell lines.
- Integration of data from patient tumors to identify key miRNAs.
- Mechanistic studies on miR-124's effect on p27 expression and cell cycle.
- In vivo studies using xenograft models with nanoparticle-mediated miRNA delivery.
Main Results:
- A panel of five miRNAs (miR-124, miR-365, miR-34b*, miR-18a, miR-506) were identified as potential tumor suppressors.
- miR-124 demonstrated an RNA-activation function, directly inducing p27 protein levels and causing G1 cell cycle arrest.
- Nanoparticle-delivered miR-124 reduced tumor growth and sensitized cancer cells to etoposide in vivo.
Conclusions:
- The identified miRNAs, particularly miR-124, can reverse the p27/myc/phospho-Rb signature associated with poor prognosis.
- miR-124 exhibits therapeutic potential by directly targeting the p27 promoter and inhibiting tumor growth.
- miRNAs represent a promising therapeutic strategy for targeting the functional impact of myc in cancer.
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