An MRPS12 mutation modifies aminoglycoside sensitivity caused by 12S rRNA mutations
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Updated: Apr 18, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Sonia Emperador1, David Pacheu-Grau2, M Pilar Bayona-Bafaluy2
1Departamento de Bioquímica, Biología Molecular y Celular, Universidad de Zaragoza Zaragoza, Spain ; Instituto de Investigación Sanitaria de Aragón, Universidad de Zaragoza Zaragoza, Spain ; Centros de Investigación Biomédica en Red de Enfermedades Raras, Universidad de Zaragoza Zaragoza, Spain.
Abstract:
Several homoplasmic pathologic mutations in mitochondrial DNA, such as those causing Leber hereditary optic neuropathy or non-syndromic hearing loss, show incomplete penetrance. Therefore, other elements must modify their pathogenicity. Discovery of these modifying factors is not an easy task because in multifactorial diseases conventional genetic approaches may not always be informative. Here, we have taken an evolutionary approach to unmask putative modifying factors for a particular homoplasmic pathologic mutation causing aminoglycoside-induced and non-syndromic hearing loss, the m.1494C>T transition in the mitochondrial DNA. The mutation is located in the decoding site of the mitochondrial ribosomal RNA. We first looked at mammalian species that had fixed the human pathologic mutation. These mutations are called compensated pathogenic deviations because an organism carrying one must also have another that suppresses the deleterious effect of the first. We found that species from the primate family Cercopithecidae (old world monkeys) harbor the m.1494T allele even if their auditory function is normal. In humans the m.1494T allele increases the susceptibility to aminoglycosides. However, in primary fibroblasts from a Cercopithecidae species, aminoglycosides do not impair cell growth, respiratory complex IV activity and quantity or the mitochondrial protein synthesis. Interestingly, this species also carries a fixed mutation in the mitochondrial ribosomal protein S12. We show that the expression of this variant in a human m.1494T cell line reduces its susceptibility to aminoglycosides. Because several mutations in this human protein have been described, they may possibly explain the absence of pathologic phenotype in some pedigree members with the most frequent pathologic mutations in mitochondrial ribosomal RNA.
Insights
Mitochondrial DNA mutations can cause hearing loss but are not always fully penetrant. An evolutionary approach identified a mitochondrial ribosomal protein variant that suppresses the pathogenic effects of a common hearing loss mutation.
Area of Science:
- Genetics
- Evolutionary Biology
- Mitochondrial Biology
Background:
- Incomplete penetrance of pathogenic mitochondrial DNA mutations necessitates identifying modifying factors.
- Conventional genetic approaches are often insufficient for multifactorial diseases.
Purpose of the Study:
- To uncover modifying factors for the m.1494C>T mitochondrial DNA mutation linked to aminoglycoside-induced and non-syndromic hearing loss using an evolutionary strategy.
- Investigate the role of compensatory mutations in mitigating the pathogenicity of mitochondrial DNA mutations.
Main Methods:
- Examined mammalian species with the m.1494C>T mutation to identify compensated pathogenic deviations.
- Analyzed primary fibroblasts from Cercopithecidae species to assess aminoglycoside effects.
- Expressed a variant mitochondrial ribosomal protein in a human m.1494T cell line.
Main Results:
- Cercopithecidae primates harbor the m.1494T allele without auditory impairment, unlike humans.
- Aminoglycosides did not affect cell growth or mitochondrial function in Cercopithecidae fibroblasts.
- A fixed mutation in mitochondrial ribosomal protein S12 in Cercopithecidae suppressed aminoglycoside susceptibility in a human cell line.
Conclusions:
- A mitochondrial ribosomal protein variant acts as a modifier, suppressing the pathogenic effects of the m.1494C>T mitochondrial DNA mutation.
- This finding suggests potential explanations for incomplete penetrance in mitochondrial inherited hearing loss and offers therapeutic avenues.
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