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Updated: Apr 17, 2026

3D Culturing of Organoids from the Intestinal Villi Epithelium Undergoing Dedifferentiation
Published on: April 1, 2021
HDAC1 and HDAC2 collectively regulate intestinal stem cell homeostasis
Cheryl D Zimberlin1, Cesare Lancini1, Rachel Sno1
1*Laboratory for Experimental Oncology and Radiobiology, Center for Experimental Molecular Medicine, Academic Medical Center, Amsterdam, The Netherlands; Division of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands; Tygat Institute for Liver and Intestinal Research and Department of Gastroenterology and Hepatology, Academic Medical Center, Amsterdam, The Netherlands; and Cancer Genomics Center, Utrecht, The Netherlands.
Histone deacetylases 1 and 2 (HDAC1 and HDAC2) are vital for maintaining intestinal homeostasis. Their simultaneous deletion causes rapid loss of gut lining integrity, highlighting their essential, redundant roles.
Area of Science:
- Cell Biology
- Gastroenterology
- Epigenetics
Background:
- Histone deacetylases (HDACs) regulate gene expression through protein deacetylation.
- Broad-spectrum HDAC inhibitors (HDACi) show clinical efficacy but cause side effects.
- Understanding specific HDAC functions is crucial for targeted therapies.
Purpose of the Study:
- To investigate the role of HDAC1 and HDAC2 in intestinal homeostasis.
- To determine the consequences of simultaneous HDAC1 and HDAC2 deletion in adult mouse intestine.
- To explore the impact of HDAC1/HDAC2 loss on intestinal stem cells.
Main Methods:
- Generation of a novel mouse model for inducible, simultaneous deletion of HDAC1 and HDAC2 in the adult intestine.
- In vitro studies using intestinal organoid cultures.
- Treatment of organoids with a class I-specific HDAC inhibitor (MS-275).
Main Results:
- Simultaneous deletion of HDAC1 and HDAC2 rapidly disrupted intestinal homeostasis.
- Intestinal lining was repopulated by surviving stem cells within 8 days.
- In vitro ablation of HDAC1/HDAC2 and MS-275 treatment reduced stem cell markers and clonogenic capacity.
Conclusions:
- HDAC1 and HDAC2 possess redundant functions and are essential for maintaining intestinal homeostasis.
- Loss of HDAC1/HDAC2 function impairs intestinal stem cell function and stemness.
- Findings provide a potential explanation for gastrointestinal side effects of HDAC inhibitors.
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