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Updated: Apr 17, 2026

3D Culturing of Organoids from the Intestinal Villi Epithelium Undergoing Dedifferentiation
Published on: April 1, 2021
HDAC1 and HDAC2 collectively regulate intestinal stem cell homeostasis
Cheryl D Zimberlin1, Cesare Lancini1, Rachel Sno1
1*Laboratory for Experimental Oncology and Radiobiology, Center for Experimental Molecular Medicine, Academic Medical Center, Amsterdam, The Netherlands; Division of Gene Regulation, Netherlands Cancer Institute, Amsterdam, The Netherlands; Tygat Institute for Liver and Intestinal Research and Department of Gastroenterology and Hepatology, Academic Medical Center, Amsterdam, The Netherlands; and Cancer Genomics Center, Utrecht, The Netherlands.
Abstract:
Histone deacetylases (HDACs) are posttranslational modifiers that deacetylate proteins. Despite their crucial role in numerous biological processes, the use of broad-range HDAC inhibitors (HDACi), has shown clinical efficacy. However, undesired side effects highlight the necessity to better understand the biology of different HDACs and target the relevant HDACs. Using a novel mouse model, in which HDAC1 and HDAC2 can be simultaneously deleted in the intestine of adult mice, we show that the simultaneous deletion of HDAC1 and HDAC2 leads to a rapid loss of intestinal homeostasis. Importantly, this deletion cannot be sustained, and 8 days after initial ablation, stem cells that have escaped HDAC1 or HDAC2 deletion swiftly repopulate the intestinal lining. In vitro ablation of HDAC1 and HDAC2 using intestinal organoid cultures resulted in a down-regulation of multiple intestinal stem cell markers and functional loss of clonogenic capacity. Importantly, treatment of wild-type organoids with class I-specific HDACi MS-275 also induced a similar loss of stemness, providing a possible rationale for the gastrointestinal side effects often observed in HDACi-treated patients. In conclusion, these data show that HDAC1 and HDAC2 have a redundant function and are essential to maintain intestinal homeostasis.
Insights
Histone deacetylases 1 and 2 (HDAC1 and HDAC2) are vital for maintaining intestinal homeostasis. Their simultaneous deletion causes rapid loss of gut lining integrity, highlighting their essential, redundant roles.
Area of Science:
- Cell Biology
- Gastroenterology
- Epigenetics
Background:
- Histone deacetylases (HDACs) regulate gene expression through protein deacetylation.
- Broad-spectrum HDAC inhibitors (HDACi) show clinical efficacy but cause side effects.
- Understanding specific HDAC functions is crucial for targeted therapies.
Purpose of the Study:
- To investigate the role of HDAC1 and HDAC2 in intestinal homeostasis.
- To determine the consequences of simultaneous HDAC1 and HDAC2 deletion in adult mouse intestine.
- To explore the impact of HDAC1/HDAC2 loss on intestinal stem cells.
Main Methods:
- Generation of a novel mouse model for inducible, simultaneous deletion of HDAC1 and HDAC2 in the adult intestine.
- In vitro studies using intestinal organoid cultures.
- Treatment of organoids with a class I-specific HDAC inhibitor (MS-275).
Main Results:
- Simultaneous deletion of HDAC1 and HDAC2 rapidly disrupted intestinal homeostasis.
- Intestinal lining was repopulated by surviving stem cells within 8 days.
- In vitro ablation of HDAC1/HDAC2 and MS-275 treatment reduced stem cell markers and clonogenic capacity.
Conclusions:
- HDAC1 and HDAC2 possess redundant functions and are essential for maintaining intestinal homeostasis.
- Loss of HDAC1/HDAC2 function impairs intestinal stem cell function and stemness.
- Findings provide a potential explanation for gastrointestinal side effects of HDAC inhibitors.
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