Related Experiment Video
Updated: Apr 17, 2026

A Method for Targeted 16S Sequencing of Human Milk Samples
Published on: March 23, 2018
Network analysis suggests a potentially 'evil' alliance of opportunistic pathogens inhibited by a cooperative network
Zhanshan Sam Ma1, Qiong Guan1, Chengxi Ye2
1Computational Biology and Medical Ecology Lab, State Key Laboratory of Genetic Resources &Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, 650223, China.
Abstract:
The critical importance of human milk to infants and even human civilization has been well established. Yet our understanding of the milk microbiome has been limited to cataloguing OTUs and computation of community diversity. To the best of our knowledge, there has been no report on the bacterial interactions within the milk microbiome. To bridge this gap, we reconstructed a milk bacterial community network based on Hunt et al. Our analysis revealed that the milk microbiome network consists of two disconnected sub-networks. One sub-network is a fully connected complete graph consisting of seven genera as nodes and all of its pair-wise interactions among the bacteria are facilitative or cooperative. In contrast, the interactions in the other sub-network of eight nodes are mixed but dominantly cooperative. Somewhat surprisingly, the only 'non-cooperative' nodes in the second sub-network are mutually cooperative Staphylococcus and Corynebacterium that include some opportunistic pathogens. This potentially 'evil' alliance between Staphylococcus and Corynebacterium could be inhibited by the remaining nodes that cooperate with one another in the second sub-network. We postulate that the 'confrontation' between the 'evil' alliance and 'benign' alliance and the shifting balance between them may be responsible for dysbiosis of the milk microbiome that permits mastitis.
Insights
Human milk microbiome interactions were mapped, revealing two distinct networks. A cooperative network may protect against opportunistic pathogens like Staphylococcus and Corynebacterium, potentially preventing mastitis.
Area of Science:
- Microbiology
- Human Microbiome
- Systems Biology
Background:
- Human milk is vital for infant health and development.
- Understanding of the milk microbiome is limited, focusing on diversity rather than interactions.
- Bacterial interactions within the milk microbiome remain largely unexplored.
Purpose of the Study:
- To reconstruct and analyze the bacterial community network within the human milk microbiome.
- To identify patterns of interaction (cooperative, competitive) among milk bacteria.
- To investigate the potential role of these interactions in milk microbiome dysbiosis and mastitis.
Main Methods:
- Reconstruction of a milk bacterial community network using existing data (Hunt et al.).
- Network analysis to identify sub-networks and types of bacterial interactions.
- Identification of key bacterial genera and their relationships within the network.
Main Results:
- The milk microbiome network comprises two disconnected sub-networks.
- One sub-network exhibits entirely facilitative/cooperative interactions among seven bacterial genera.
- The second sub-network shows mixed but predominantly cooperative interactions, including a notable alliance between Staphylococcus and Corynebacterium.
Conclusions:
- The milk microbiome network structure suggests complex ecological interactions.
- An 'evil' alliance of opportunistic pathogens (Staphylococcus, Corynebacterium) exists within a predominantly cooperative network.
- The balance between cooperative and potentially pathogenic interactions may influence milk microbiome stability and susceptibility to mastitis.
Related Concept Videos
Microbial Interactions: Cooperation
Development of Human Microbiota
Surface Membrane Barriers
The outer layer of the skin, the epidermis, is a robust barrier comprising layers of closely packed keratinized cells. This dense arrangement prevents microbes from penetrating the body. The periodic shedding of epidermal cells...
Microbial Interactions: Competition
Antimicrobial Proteins
Interferons
Interferons (IFNs) are proteins produced by lymphocytes, macrophages, and fibroblasts infected with viruses. While IFNs cannot prevent viruses from entering and...
Development of the Oral Microbiota

