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Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells
Published on: April 26, 2017
CLK2 Is an Oncogenic Kinase and Splicing Regulator in Breast Cancer
Taku Yoshida1, Jee Hyun Kim2, Kristopher Carver1
1Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts. Department of Medicine, Harvard Medical School, Boston, Massachusetts. Department of Medicine, Brigham and Women's Hospital, Boston, Massachusetts.
Abstract:
Genetically activated kinases have been attractive therapeutic targets in cancer due to the relative ease of developing tumor-specific treatment strategies for them. To discover novel putative oncogenic kinases, we identified 26 genes commonly amplified and overexpressed in breast cancer and subjected them to a lentiviral shRNA cell viability screen in a panel of breast cancer cell lines. Here, we report that CLK2, a kinase that phosphorylates SR proteins involved in splicing, acts as an oncogene in breast cancer. Deregulated alternative splicing patterns are commonly observed in human cancers but the underlying mechanisms and functional relevance are still largely unknown. CLK2 is amplified and overexpressed in a significant fraction of breast tumors. Downregulation of CLK2 inhibits breast cancer growth in cell culture and in xenograft models and it enhances cell migration and invasion. Loss of CLK2 in luminal breast cancer cells leads to the upregulation of epithelial-to-mesenchymal transition (EMT)-related genes and a switch to mesenchymal splice variants of several genes, including ENAH (MENA). These results imply that therapeutic targeting of CLK2 may be used to modulate EMT splicing patterns and to inhibit breast tumor growth.
Insights
CLK2, a splicing kinase, drives breast cancer growth and metastasis. Inhibiting CLK2 shows promise for new breast cancer therapies by targeting oncogenic splicing patterns and epithelial-to-mesenchymal transition.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Genetically activated kinases are promising cancer therapeutic targets.
- Aberrant alternative splicing is common in human cancers, but mechanisms are unclear.
- CLK2 (CDC-like kinase 2) is amplified and overexpressed in breast tumors.
Purpose of the Study:
- To identify novel oncogenic kinases in breast cancer.
- To investigate the role of CLK2 in breast cancer progression and splicing.
Main Methods:
- Conducted a lentiviral shRNA cell viability screen of 26 amplified/overexpressed genes in breast cancer cell lines.
- Analyzed the effect of CLK2 downregulation on cell growth, migration, and invasion.
- Examined gene expression and alternative splicing patterns, including epithelial-to-mesenchymal transition (EMT)-related genes.
Main Results:
- CLK2 was identified as an oncogene in breast cancer.
- Downregulation of CLK2 inhibited breast cancer cell growth in vitro and in vivo (xenograft models).
- Loss of CLK2 promoted cell migration and invasion, upregulating EMT-related genes and mesenchymal splice variants like ENAH (MENA).
Conclusions:
- CLK2 acts as an oncogene in breast cancer by influencing splicing patterns.
- Targeting CLK2 may offer a therapeutic strategy to inhibit breast tumor growth and modulate EMT.
- Understanding CLK2's role in alternative splicing provides insights into cancer progression.
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