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Published on: August 15, 2019
The ARVD/C genetic variants database: 2014 update
Elisabetta Lazzarini1, Jan D H Jongbloed, Kalliopi Pilichou
1Department of Cardiac, Thoracic and Vascular Sciences, University of Padua, Padua, Italy; Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Insights
Arrhythmogenic cardiomyopathy (ACM) is an inherited heart condition. Genetic databases now track over 1,400 variants in 12 ACM genes, aiding in understanding and diagnosing this disease.
Area of Science:
- Cardiovascular Genetics
- Inherited Cardiac Diseases
Background:
- Arrhythmogenic cardiomyopathy (ACM) is an inherited cardiac disease.
- It is characterized by fibro-fatty replacement of the myocardium, leading to ventricular arrhythmias and sudden death.
Purpose of the Study:
- To update and expand the Arrhythmogenic Right Ventricular Dysplasia/Cardiomyopathy (ARVD/C) Genetic Variants Database.
- To provide a comprehensive resource for ACM-associated genetic variants to aid interpretation and genetic counseling.
Main Methods:
- Collected genetic data from over 160 publications.
- Updated the ARVD/C database to include over 1,400 variants in 12 ACM-related genes as of April 20, 2014.
Main Results:
- The updated database contains over 1,400 variants in 12 ACM-related genes.
- Only 411 of these variants are currently reported as pathogenic, with the significance of approximately 1,000 variants remaining unknown.
Conclusions:
- The expanded ARVD/C database is a valuable resource for ACM genetic data.
- This collection facilitates the interpretation of genetic variants and supports genetic counseling for arrhythmogenic cardiomyopathy.
Abstract:
Arrhythmogenic cardiomyopathy (ACM) is an inherited cardiac disease characterized by myocardial atrophy, fibro-fatty replacement, and a high risk of ventricular arrhythmias that lead to sudden death. In 2009, genetic data from 57 publications were collected in the arrhythmogenic right ventricular dysplasia/cardiomyopathy (ARVD/C) Genetic Variants Database (freeware available at http://www.arvcdatabase.info), which comprised 481 variants in eight ACM-associated genes. In recent years, deep genetic sequencing has increased our knowledge of the genetics of ACM, revealing a large spectrum of nucleotide variations for which pathogenicity needs to be assessed. As of April 20, 2014, we have updated the ARVD/C database into the ARVD/C database to contain more than 1,400 variants in 12 ACM-related genes (PKP2, DSP, DSC2, DSG2, JUP, TGFB3, TMEM43, LMNA, DES, TTN, PLN, CTNNA3) as reported in more than 160 references. Of these, only 411 nucleotide variants have been reported as pathogenic, whereas the significance of the other approximately 1,000 variants is still unknown. This comprehensive collection of ACM genetic data represents a valuable source of information on the spectrum of ACM-associated genes and aims to facilitate the interpretation of genetic data and genetic counseling.
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