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Updated: Apr 17, 2026

High-throughput Screening of Chemical Compounds to Elucidate Their Effects on Bacterial Persistence
Published on: February 23, 2021
Impacts of global transcriptional regulators on persister metabolism
Wendy W K Mok1, Mehmet A Orman1, Mark P Brynildsen2
1Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, USA.
Abstract:
Bacterial persisters are phenotypic variants with an extraordinary capacity to tolerate antibiotics, and they are hypothesized to be a main cause of chronic and relapsing infections. Recent evidence has suggested that the metabolism of persisters can be targeted to develop therapeutic countermeasures; however, knowledge of persister metabolism remains limited due to difficulties associated with isolating these rare and transient phenotypic variants. By using a technique to measure persister catabolic activity, which is based on the ability of metabolites to enable aminoglycoside (AG) killing of persisters, we investigated the role of seven global transcriptional regulators (ArcA, Cra, cyclic AMP [cAMP] receptor protein [CRP], DksA, FNR, Lrp, and RpoS) on persister metabolism. We found that removal of CRP resulted in a loss of AG potentiation in persisters for all metabolites tested. These results highlight a central role for cAMP/CRP in persister metabolism, as its perturbation can significantly diminish the metabolic capabilities of persisters and effectively eliminate the ability of AGs to eradicate these troublesome bacteria.
Insights
Bacterial persisters are rare cells that tolerate antibiotics. Targeting cyclic AMP/cyclic AMP receptor protein (cAMP/CRP) significantly impairs persister metabolism, making them susceptible to antibiotics.
Area of Science:
- Microbiology
- Molecular Biology
- Drug Discovery
Background:
- Bacterial persisters are phenotypic variants exhibiting high antibiotic tolerance, contributing to chronic and relapsing infections.
- Targeting persister metabolism is a promising therapeutic strategy, but knowledge is limited due to isolation challenges.
- Persister catabolic activity can be measured by their ability to enable aminoglycoside (AG) killing.
Purpose of the Study:
- To investigate the role of seven global transcriptional regulators (ArcA, Cra, cAMP receptor protein [CRP], DksA, FNR, Lrp, and RpoS) in bacterial persister metabolism.
- To understand how these regulators influence the metabolic activity of persisters and their susceptibility to antibiotics.
Main Methods:
- Utilized a novel assay measuring persister catabolic activity based on aminoglycoside (AG) potentiation.
- Systematically evaluated the impact of deleting key transcriptional regulators on persister metabolism.
- Quantified the effect of regulator deletion on the ability of AGs to kill persisters.
Main Results:
- The absence of cyclic AMP receptor protein (CRP) abolished AG potentiation across all tested metabolites.
- Perturbation of CRP significantly diminished persister metabolic capabilities.
- Deletion of CRP eliminated the efficacy of AGs in eradicating persisters.
Conclusions:
- Cyclic AMP/cyclic AMP receptor protein (cAMP/CRP) plays a crucial role in bacterial persister metabolism.
- Targeting the cAMP/CRP pathway offers a potential strategy to enhance antibiotic efficacy against persister cells.
- Understanding persister metabolism is key to developing new treatments for persistent bacterial infections.
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