Conformation-dependent binding and tumor-targeted delivery of siRNA by a designed TRBP2: Affibody fusion protein
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Updated: Apr 16, 2026

Analyzing Tumor and Tissue Distribution of Target Antigen Specific Therapeutic Antibody
Published on: May 16, 2020
Ghulam Hassan Dar1, Vijaya Gopal1, Madhusudhana Rao1
1CSIR-Centre for Cellular and Molecular Biology, Hyderabad, India.
Abstract:
Efficiency of systemically delivered siRNA in gene silencing is compromised due to lack of target-specific delivery and rapid clearance of siRNA by in vivo elimination pathways. We designed a fusion protein consisting of a dsRNA binding domain of transactivation response RNA binding protein (TRBP2) fused to ErbB2 binding affibody (AF) for target specific delivery of siRNA. Designated as TRAF, the fusion protein is stable and binds efficiently and specifically to siRNA, forming homogenous non-aggregated and nuclease-resistant particles that efficiently and selectively transport siRNA into HER-2 overexpressing cancer cells and tissues. Administration of siRNA by TRAF into cells resulted in significant silencing of chosen genes involved in cell proliferation viz. AURKB and ErbB2. Noticeably, intravenous administration of TRAF:siRNA against these genes resulted in remarkable tumor suppression in the SK-OV-3 xenograft mouse model. Our results establish the potential of engineered proteins for specific and systemic delivery of siRNA for cancer therapy.
From The Clinical Editor:
The use of siRNA in one of many novel treatments in cancer therapy. However, a major challenge for using siRNA is the lack of specificity and rapid RNA clearance. In this article, the authors designed a tumor targeting fusion protein, which can deliver siRNA specifically. In the experimental xenograft model, it was shown that intravenous administration of this resulted in significant tumor suppression. The results seem to hold promise in future clinical studies.
Insights
Engineered fusion proteins effectively deliver small interfering RNA (siRNA) to HER-2 overexpressing cancer cells, significantly suppressing tumor growth in preclinical models. This targeted approach overcomes challenges in systemic siRNA delivery for cancer therapy.
Area of Science:
- Biotechnology
- Molecular Biology
- Cancer Research
Background:
- Small interfering RNA (siRNA) holds promise for cancer therapy but faces challenges with targeted delivery and rapid clearance.
- Current methods often lack specificity, limiting siRNA's therapeutic potential in vivo.
- Developing effective delivery systems is crucial for successful siRNA-based cancer treatments.
Purpose of the Study:
- To engineer a novel fusion protein for targeted delivery of siRNA to HER-2 overexpressing cancer cells.
- To evaluate the stability, specificity, and efficacy of the fusion protein-siRNA complex in vitro and in vivo.
- To assess the therapeutic potential of this system in a preclinical cancer model.
Main Methods:
- A fusion protein, TRAF, was designed by combining the dsRNA binding domain of TRBP2 with an ErbB2 binding affibody.
- TRAF was shown to form stable, nuclease-resistant particles with siRNA, enabling specific binding to HER-2 overexpressing cells.
- The efficacy of TRAF:siRNA in silencing AURKB and ErbB2 genes and suppressing tumor growth was evaluated in the SK-OV-3 xenograft mouse model.
Main Results:
- The TRAF fusion protein efficiently and specifically delivered siRNA into HER-2 positive cancer cells and tissues.
- Administration of TRAF:siRNA resulted in significant gene silencing of AURKB and ErbB2.
- Intravenous administration of TRAF:siRNA led to remarkable tumor suppression in a xenograft mouse model.
Conclusions:
- Engineered fusion proteins like TRAF can overcome limitations of systemic siRNA delivery.
- TRAF facilitates targeted delivery of siRNA, enhancing gene silencing in cancer cells.
- This approach shows significant potential for developing effective siRNA-based cancer therapeutics.
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