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Isolation of Ribosome Bound Nascent Polypeptides in vitro to Identify Translational Pause Sites Along mRNA
Published on: July 6, 2012
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Isolation of ribosomes and polysomes.
Maria C Rivera1, Bruce Maguire2, James A Lake3
1Department of Biology and Center for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia 23284;
Cold Spring Harbor Protocols
|March 4, 2015
Summary
This study details a preparative differential centrifugation method for isolating ribosomes from various cell types. The optimized protocol yields ribosome monomers and polysomes, enhancing molecular biology research capabilities.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- Ribosomes are essential cellular machinery responsible for protein synthesis.
- Efficient isolation of intact ribosomes is crucial for studying translation and related processes.
- Existing methods may lack broad applicability or yield preparations of suboptimal quality.
Purpose of the Study:
- To describe a robust preparative differential centrifugation protocol for isolating ribosomes.
- To optimize the protocol for diverse biological sources, including prokaryotic and eukaryotic cells.
- To enhance the purity and integrity of isolated ribosomal fractions.
Main Methods:
- Preparative differential centrifugation of crude cell homogenates.
- Optimization of homogenization and collection steps for various cell types (prokaryotic, mammalian, plant, reticulocytes, chloroplasts).
- Purification using high-salt sucrose cushion (NH4Cl or KCl) to remove contaminants.
- Optional further purification by sucrose gradient centrifugation.
Main Results:
- Successful isolation of subcellular fractions enriched in ribosome monomers and polysomes.
- Demonstrated applicability across prokaryotic cells, mammalian and plant tissues, reticulocytes, and chloroplasts.
- Improved purity of ribosomal preparations through high-salt sucrose cushion treatment.
Conclusions:
- The described protocol provides an effective method for isolating high-quality ribosomes from diverse sources.
- This technique facilitates downstream analyses of ribosomal function and composition.
- The optimized protocol enhances the reliability of ribosome-based molecular biology studies.
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