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Whole-Brain Single-Cell Imaging and Analysis of Intact Neonatal Mouse Brains Using MRI, Tissue Clearing, and Light-Sheet Microscopy
Published on: August 1, 2022
A FreeSurfer-compliant consistent manual segmentation of infant brains spanning the 0-2 year age range
Katyucia de Macedo Rodrigues1, Emma Ben-Avi2, Danielle D Sliva3
1Fetal-Neonatal Neuroimaging and Developmental Science Center, Boston Children's Hospital Boston, MA, USA.
Insights
Researchers created FreeSurfer compatible segmentation guidelines and a dataset for infant MRI scans. This resource supports medical and neuroscience research in early brain development.
Area of Science:
- Neuroimaging
- Developmental Neuroscience
- Medical Image Analysis
Background:
- Accurate brain segmentation is crucial for understanding neurodevelopment.
- Existing segmentation tools may not be optimized for the unique characteristics of infant brains.
- A standardized approach is needed for analyzing pediatric neuroimaging data.
Purpose of the Study:
- To develop and validate FreeSurfer compatible segmentation guidelines specifically for infant MRI scans.
- To create a unique dataset of manually segmented infant brain MRI acquisitions.
- To facilitate research in pediatric neuroscience and medicine.
Main Methods:
- Detailed description of novel segmentation guidelines for infant brain MRI.
- Manual segmentation of a diverse dataset of infant brain MRI scans.
- Ensuring FreeSurfer compatibility for broad usability.
Main Results:
- A comprehensive set of segmentation guidelines tailored for infant neuroimaging.
- A unique, manually curated dataset of infant brain MRI scans (ages 0-2 years).
- The dataset features a near-even age distribution, enhancing its utility.
Conclusions:
- The developed guidelines and dataset provide a valuable resource for the neuroscience and medical research communities.
- These tools will aid in the detailed study of early brain development and related conditions.
- Potential applications span various fields within pediatric medicine and brain research.
Abstract:
We present a detailed description of a set of FreeSurfer compatible segmentation guidelines tailored to infant MRI scans, and a unique data set of manually segmented acquisitions, with subjects nearly evenly distributed between 0 and 2 years of age. We believe that these segmentation guidelines and this dataset will have a wide range of potential uses in medicine and neuroscience.
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