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Updated: Apr 16, 2026

Malachite Green Assay for the Discovery of Heat-Shock Protein 90 Inhibitors
Published on: January 20, 2023
Development of a mitochondria-targeted Hsp90 inhibitor based on the crystal structures of human TRAP1
Changwook Lee, Hye-Kyung Park, Hanbin Jeong
1∥New Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Daegu, 701-310, Korea.
Abstract:
The mitochondrial pool of Hsp90 and its mitochondrial paralogue, TRAP1, suppresses cell death and reprograms energy metabolism in cancer cells; therefore, Hsp90 and TRAP1 have been suggested as target proteins for anticancer drug development. Here, we report that the actual target protein in cancer cell mitochondria is TRAP1, and current Hsp90 inhibitors cannot effectively inactivate TRAP1 because of their insufficient accumulation in the mitochondria. To develop mitochondrial TRAP1 inhibitors, we determined the crystal structures of human TRAP1 complexed with Hsp90 inhibitors. The isopropyl amine of the Hsp90 inhibitor PU-H71 was replaced with the mitochondria-targeting moiety triphenylphosphonium to produce SMTIN-P01. SMTIN-P01 showed a different mode of action from the nontargeted PU-H71, as well as much improved cytotoxicity to cancer cells. In addition, we determined the structure of a TRAP1-adenylyl-imidodiphosphate (AMP-PNP) complex. On the basis of comparative analysis of TRAP1 structures, we propose a molecular mechanism of ATP hydrolysis that is crucial for chaperone function.
Insights
Researchers developed a novel mitochondrial TRAP1 inhibitor, SMTIN-P01, to target cancer cells more effectively. This new drug shows improved cytotoxicity compared to existing Hsp90 inhibitors by specifically accumulating in mitochondria.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Research
Background:
- Heat shock protein 90 (Hsp90) and its paralogue TRAP1 are implicated in cancer cell survival and metabolism.
- Hsp90 inhibitors are explored for cancer therapy, but their mitochondrial targets remain unclear.
- TRAP1's role in cancer suggests it as a potential therapeutic target.
Purpose of the Study:
- To identify the specific mitochondrial target of Hsp90 inhibitors in cancer cells.
- To develop novel inhibitors that effectively target mitochondrial TRAP1.
- To elucidate the mechanism of TRAP1 ATP hydrolysis and its role in chaperone function.
Main Methods:
- Determined crystal structures of human TRAP1 complexed with Hsp90 inhibitors.
- Synthesized a novel mitochondria-targeting TRAP1 inhibitor, SMTIN-P01, by modifying PU-H71.
- Assessed the cytotoxicity and mode of action of SMTIN-P01 in cancer cells.
- Determined the structure of a TRAP1-adenylyl-imidodiphosphate (AMP-PNP) complex.
Main Results:
- Identified TRAP1 as the primary mitochondrial target, not effectively inhibited by current Hsp90 inhibitors due to poor mitochondrial accumulation.
- SMTIN-P01 demonstrated enhanced accumulation in mitochondria and significantly improved cytotoxicity compared to PU-H71.
- Revealed a distinct mode of action for SMTIN-P01.
- Proposed a molecular mechanism for ATP hydrolysis in TRAP1 based on structural analysis.
Conclusions:
- TRAP1 is the key mitochondrial target for cancer therapy, requiring specific inhibitors.
- SMTIN-P01 represents a promising new strategy for targeting mitochondrial TRAP1 in cancer.
- Understanding TRAP1's ATP hydrolysis mechanism is crucial for developing effective anticancer agents.
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