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Updated: Apr 15, 2026

Probing RNA Structure with Dimethyl Sulfate Mutational Profiling with Sequencing In Vitro and in Cells
Published on: December 9, 2022
NAD in RNA: unconventional headgear
Daniel J Luciano1, Joel G Belasco1
1Kimmel Center for Biology and Medicine at the Skirball Institute and Department of Microbiology, New York University School of Medicine, 540 First Avenue, New York, NY 10016, USA.
Bacterial RNA can have a unique cap structure similar to nicotinamide adenine dinucleotide (NAD). Researchers discovered an enzyme in E. coli that removes this noncanonical cap, though its function is still unknown.
Area of Science:
- Molecular Biology
- Biochemistry
- Microbiology
Background:
- Bacterial RNA 5' ends are typically assumed to have triphosphate or monophosphate modifications.
- Emerging evidence indicates that some bacterial RNAs may possess cap-like modifications, similar to eukaryotic RNAs.
Purpose of the Study:
- To identify novel RNA cap structures in bacteria.
- To characterize the enzyme responsible for removing noncanonical RNA caps in Escherichia coli.
Main Methods:
- Analysis of RNA 5' end modifications in E. coli.
- Enzymatic assays to identify and characterize RNA cap-removing activity.
Main Results:
- Identification of bacterial RNAs with a noncanonical 5' cap resembling nicotinamide adenine dinucleotide (NAD).
- Discovery of a cellular enzyme in E. coli capable of removing this NAD-like RNA cap.
Conclusions:
- Bacterial RNA capping is more diverse than previously thought.
- The biological role of NAD-like RNA caps in E. coli requires further investigation.
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