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Size Exclusion Chromatography for Separating Extracellular Vesicles from Conditioned Cell Culture Media
Published on: May 13, 2022
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Ready-made chromatography columns for extracellular vesicle isolation from plasma
Joanne Louise Welton1, Jason Paul Webber1, Laur-Alexandru Botos2
1Institute of Cancer and Genetics, School of Medicine, Cardiff University, Velindre Cancer Centre, Whitchurch, Cardiff, United Kingdom.
Journal of Extracellular Vesicles
|March 31, 2015
Summary
Size exclusion chromatography rapidly purifies circulating vesicles from plasma, removing over 95% of contaminating proteins. However, subsequent concentration steps reduced vesicle recovery, impacting overall sample purity.
Area of Science:
- Biochemistry
- Molecular Biology
- Nanotechnology
Background:
- Proteomic analysis of circulating vesicles is challenging due to contamination with abundant blood proteins.
- Effective purification is crucial for accurate identification of vesicle-associated proteins in plasma and serum.
Observation:
- A commercially available size exclusion chromatography column was evaluated for rapid vesicle purification.
- The column effectively separated vesicles from high-abundance proteins like albumin in both conditioned medium and plasma.
- Exosomal protein markers (e.g., CD9, CD81) peaked before abundant proteins, enabling selective fraction collection.
Findings:
- Size exclusion chromatography eliminated over 95% of non-vesicular protein, enriching for exosome-like vesicles.
- The method demonstrated good reproducibility and allowed for sample processing in under 10 minutes.
- Surprisingly, post-column concentration steps led to reduced vesicle recovery and lower sample purity (particle-to-protein ratio).
Implications:
- This chromatography technique offers a convenient and efficient way to pre-process biological fluids for vesicle research.
- Optimizing downstream concentration methods is necessary to fully leverage the purification benefits.
- The findings facilitate more accurate proteomic studies of circulating vesicles in disease diagnostics.

