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Updated: Apr 15, 2026

Visualization of DNA Repair Proteins Interaction by Immunofluorescence
Published on: June 26, 2020
ATM-mediated KDM2A phosphorylation is required for the DNA damage repair
1Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), State Key Laboratory of Natural and Biomimetic Drugs, Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, China.
Abstract:
The ataxia-telangiectasia mutated (ATM) protein is a key signaling molecule that modulates the DNA damage response. However, the exact mechanism by which ATM regulates DNA damage repair has not yet been elucidated. Here, we report that ATM regulates the DNA damage response by phosphorylating lysine-specific demethylase 2A (KDM2A), a histone demethylase that acts at sites of H3K36 dimethylation. ATM interacts with KDM2A, and their interaction significantly increases in response to DNA double-stranded, but not single-stranded, breaks. ATM specifically phosphorylates KDM2A at threonine 632 (T632) following DNA damage, as demonstrated by a mutagenesis assay and mass spectrometric analysis. Although KDM2A phosphorylation does not alter its own demethylase activity, T632 phosphorylation of KDM2A largely abrogates its chromatin-binding capacity, and H3K36 dimethylation near DNA damage sites is significantly increased. Consequently, enriched H3K36 dimethylation serves as a platform to recruit the MRE11 complex to DNA damage sites by directly interacting with the BRCT2 domain of NBS1, which results in efficient DNA damage repair and enhanced cell survival. Collectively, our study reveals a novel mechanism for ATM in connecting histone modifications with the DNA damage response.
Insights
The ataxia-telangiectasia mutated (ATM) protein regulates DNA repair by phosphorylating KDM2A, a histone demethylase. This phosphorylation enhances DNA repair efficiency and cell survival following DNA damage.
Area of Science:
- Molecular Biology
- Cellular Biology
- Biochemistry
Background:
- The DNA damage response is crucial for maintaining genomic stability.
- The precise mechanisms by which ATM protein regulates DNA repair are not fully understood.
Purpose of the Study:
- To elucidate the mechanism by which ATM regulates DNA damage repair.
- To investigate the role of KDM2A in the ATM-mediated DNA damage response.
Main Methods:
- Co-immunoprecipitation assays to study ATM-KDM2A interaction.
- Site-directed mutagenesis and mass spectrometry to identify phosphorylation sites.
- Chromatin immunoprecipitation to assess histone modifications and binding.
- Cell viability assays to evaluate cell survival.
Main Results:
- ATM interacts with KDM2A, with increased interaction upon DNA double-strand breaks.
- ATM phosphorylates KDM2A at Threonine 632 (T632) in response to DNA damage.
- Phosphorylation of KDM2A at T632 reduces its chromatin binding, leading to increased H3K36 dimethylation near damage sites.
- Enriched H3K36 dimethylation recruits the MRE11 complex via NBS1, promoting DNA repair and cell survival.
Conclusions:
- ATM-mediated phosphorylation of KDM2A is a novel mechanism linking histone modification to DNA damage response.
- This pathway involving KDM2A, H3K36 dimethylation, and the MRE11 complex is critical for efficient DNA repair and cell survival.
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