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Updated: Apr 15, 2026

Multiplex PCR Assay for Typing of Staphylococcal Cassette Chromosome Mec Types I to V in Methicillin-resistant Staphylococcus aureus
Published on: September 5, 2013
Identification of multiresistance gene cfr in methicillin-resistant Staphylococcus aureus from pigs: plasmid location
Dexi Li1, Congming Wu1, Yang Wang1
1Beijing Key Laboratory of Detection Technology for Animal-Derived Food Safety, College of Veterinary Medicine, China Agricultural University, Beijing, People's Republic of China.
Abstract:
The multiresistance gene cfr was found in 8/231 porcine methicillin-resistant Staphylococcus aureus isolates. They were characterized by multilocus sequence typing, spa typing, dru typing, and staphylococcal cassette chromosome mec (SCCmec) typing as ST627-t002-dt12w-IVb, ST6-t304-dt12w-IVb, ST9-t899-dt12w-IVb, ST9-t899-dt12ae-IVb, or ST63-t899-dt12v-IVb. Different cfr gene regions were detected on plasmids of ca. 35 kb in seven isolates. For the first time, an ISEnfa4-cfr-IS256 fragment was found to be inserted upstream of the ccr genes in a chromosomal SCCmec IVb element of the remaining isolate.
Insights
The multiresistance gene cfr was identified in pig-origin methicillin-resistant Staphylococcus aureus (MRSA). This gene was found on plasmids in most isolates, but uniquely on a staphylococcal cassette chromosome mec (SCCmec) element in one.
Area of Science:
- Veterinary Microbiology
- Antimicrobial Resistance
- Molecular Epidemiology
Background:
- Methicillin-resistant Staphylococcus aureus (MRSA) is a significant pathogen in both human and animal health.
- The cfr gene confers resistance to multiple classes of antibiotics, including oxazolidinones, lincosamides, and macrolides.
- Porcine MRSA isolates are a potential reservoir for antimicrobial resistance genes.
Purpose of the Study:
- To investigate the presence and genetic context of the multiresistance gene cfr in porcine MRSA isolates.
- To characterize the molecular epidemiology of these isolates using various typing methods.
- To determine the location and genetic elements associated with the cfr gene in these strains.
Main Methods:
- Multilocus sequence typing (MLST)
- spa typing
- dru typing
- Staphylococcal cassette chromosome mec (SCCmec) typing
- Plasmid analysis
- Identification of insertion sequences and gene fragments
Main Results:
- The cfr gene was detected in 8 out of 231 porcine MRSA isolates.
- Isolates were characterized into distinct sequence types (STs) and spa types, including ST627, ST6, ST9, and ST63.
- In seven isolates, cfr was located on plasmids of approximately 35 kb.
- For the first time, an ISEnfa4-cfr-IS256 fragment was identified integrated into a chromosomal SCCmec IVb element in one isolate.
Conclusions:
- The cfr gene is present in porcine MRSA, highlighting the importance of monitoring antimicrobial resistance in livestock.
- The cfr gene in porcine MRSA can be located on both plasmids and integrated chromosomal elements.
- The novel finding of cfr integrated within an SCCmec element in a porcine MRSA isolate warrants further investigation into its dissemination and impact.
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