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Updated: Apr 15, 2026

Pre-Implantation Genetic Testing for Aneuploidy on a Semiconductor Based Next-Generation Sequencing Platform
Published on: August 17, 2022
Copy-number variation and false positive prenatal aneuploidy screening results
Matthew W Snyder1, LaVone E Simmons, Jacob O Kitzman
1From the Department of Genome Sciences (M.W.S., J.O.K., B.P.C., R.M.D., E.E.E., J.S.), Division of Maternal-Fetal Medicine, Department of Obstetrics and Gynecology (L.E.S., J.M.H., H.S.G.), and Howard Hughes Medical Institute (E.E.E.), University of Washington, and the Clinical Research Division, Fred Hutchinson Cancer Research Center (H.S.G.) - both in Seattle.
Noninvasive prenatal screening for fetal aneuploidy using cell-free DNA (cfDNA) can yield false positives. Maternal copy-number variants, specifically duplications on chromosome 18, may explain some of these inaccurate results.
Area of Science:
- Genetics
- Prenatal Diagnostics
- Molecular Biology
Background:
- Noninvasive prenatal screening (NIPS) for fetal aneuploidy using cell-free DNA (cfDNA) offers high accuracy but is limited by low positive predictive values.
- The underlying causes of false positive NIPS results remain largely unknown, hindering test interpretation.
Observation:
- Four pregnancies with discordant NIPS results were investigated.
- In two cases, discordant results were linked to the presence of maternal duplications on chromosome 18.
Findings:
- Maternal copy-number variants (CNVs) are identified as a potential cause for false positive NIPS results.
- Specific large maternal duplications on chromosome 18 were implicated in discordant NIPS findings.
Implications:
- Understanding maternal CNVs can improve the accuracy and interpretation of NIPS results.
- This research may lead to refined NIPS protocols and better genetic counseling for expectant parents.
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