Comparison of the refined crystal structures of two wheat germ isolectins

The crystal structures of two closely related members of the multigene family of wheat lectins (isolectins 1 and 2) have been compared. These isolectins differ at five sequence positions, one being located in the saccharide binding site modulating ligand affinity. Crystals of the two isolectins are closely isomorphous (space group C2). The atomic models are based on structure refinement at 1.8 A resolution in the case of isolectin 2 (WGA2) and 2.0 A resolution in the case of isolectin 1 (WGA1). Refinement results for WGA1, recently completed with a crystallographic R-factor of 16.5% (Fo greater than 3 sigma (Fo)), are presented. Examination of a difference Fourier map, [FWGA2-FWGA1], at 2.0 A resolution and direct superposition of the two models indicated an overall close match of the two structures. Local differences are observed in the region of residues 44 to 69, where three sequence differences occur, and at highly mobile external residues on the surface. The average positional discrepancy (root-mean-square delta r) for corresponding protein atoms in the two crystal structures is 0.64 A for independent protomer I and 0.61 A for protomer II (0.29 A and 0.30 A for main-chain atoms). The mean atomic temperature factors are very similar 20.9 versus 22.0 A2). Regions of high flexibility coincide in the two isolectin structures. Of the 210 water sites identified in WGA1, 144 have corresponding positions in WGA2. A set of 51 well-ordered sites was found to be identical in the two independent environments in both structures, and was considered to be important for structure stabilization. Both of the unique sugar binding sites superimpose very closely, exhibiting root-mean-square positional differences ranging from 0.29 A to 0.42 A. The side-chains of the critical tyrosine residues, Tyr73 (P-site) and Tyr159 (S-site), superimpose best, while other highly flexible aromatic groups (Tyr64 and Trp150) and several water sites display large differences in position (0.5 to 1.0 A) and high temperature factors. The aromatic side-chains of Tyr66 in WGA1 and His66 in WGA2 are oriented similarly.