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Array Comparative Genomic Hybridization Array CGH for Detection of Genomic Copy Number Variants
Published on: February 21, 2015
Phenotypic Association Analyses With Copy Number Variation in Recurrent Depressive Disorder
James J H Rucker1, Katherine E Tansey2, Margarita Rivera3
1Medical Research Council Social Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, King's College London, London, United Kingdom; National Institute for Health Research Biomedical Research Centre, South London and Maudsley National Health Service Foundation Trust and Institute of Psychiatry, King's College London.
This study found no strong link between copy number variants (CNVs) and recurrent depressive disorder (RDD). However, sex chromosome abnormalities like Turner's syndrome were more common in RDD cases.
Area of Science:
- Genetics
- Psychiatry
- Molecular Biology
Background:
- Identifying the genetic underpinnings of depressive disorders remains a significant challenge.
- Previous research linked rare exonic deletion copy number variants (CNVs) to recurrent depressive disorder (RDD).
- Sex chromosome abnormalities have also been noted in association with RDD.
Purpose of the Study:
- To re-examine a dataset of recurrent depressive disorder (RDD) cases and controls.
- To investigate the role of larger CNVs and chromosomal abnormalities in RDD.
- To perform association analyses with clinical data.
Main Methods:
- Reanalysis of an RDD dataset comprising 3106 cases and 459 screened controls, plus 2699 population controls.
- Investigation of larger CNVs and chromosomal abnormalities.
- Association analyses with clinical data.
Main Results:
- An enrichment of Turner's syndrome was observed in RDD cases compared to a large infant population sample (p = .023, OR = 7.76).
- A case of diploid/triploid mosaicism and several cases of uniparental isodisomy were identified.
- Large deletion CNVs were not more frequent in cases than controls, but contained more genes in cases (p = .0002).
Conclusions:
- The study does not support a substantial role for CNVs in RDD after statistical correction.
- Occasional RDD cases may harbor large, etiological variants.
- Genetic pleiotropy and sample heterogeneity necessitate very large sample sizes for conclusive genetic studies in mood disorders.
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