Mode of action and pharmacogenomic biomarkers for exceptional responders to didemnin B
Malia B Potts1, Elizabeth A McMillan1, Tracy I Rosales1
1Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Abstract:
Modern cancer treatment employs many effective chemotherapeutic agents originally discovered from natural sources. The cyclic depsipeptide didemnin B has demonstrated impressive anticancer activity in preclinical models. Clinical use has been approved but is limited by sparse patient responses combined with toxicity risk and an unclear mechanism of action. From a broad-scale effort to match antineoplastic natural products to their cellular activities, we found that didemnin B selectively induces rapid and wholesale apoptosis through dual inhibition of PPT1 and EEF1A1. Furthermore, empirical discovery of a small panel of exceptional responders to didemnin B allowed the generation of a regularized regression model to extract a sparse-feature genetic biomarker capable of predicting sensitivity to didemnin B. This may facilitate patient selection in a fashion that could enhance and expand the therapeutic application of didemnin B against neoplastic disease.
Insights
Didemnin B, a natural anticancer drug, induces apoptosis by inhibiting PPT1 and EEF1A1. A genetic biomarker was developed to identify patients likely to respond to this cancer therapy.
Area of Science:
- Natural Product Chemistry
- Cancer Biology
- Pharmacology
Background:
- Many cancer treatments derive from natural sources.
- Didemnin B shows anticancer potential but has limited clinical use due to toxicity and an unclear mechanism.
- Identifying specific patient responses is crucial for effective cancer therapy.
Purpose of the Study:
- To elucidate the mechanism of action for didemnin B.
- To identify a genetic biomarker for predicting patient response to didemnin B.
- To enhance the therapeutic application of didemnin B in cancer treatment.
Main Methods:
- Investigated didemnin B's cellular activities through broad-scale screening.
- Determined didemnin B induces apoptosis via dual inhibition of PPT1 and EEF1A1.
- Developed a predictive model using genetic data from exceptional responders.
Main Results:
- Didemnin B selectively triggers rapid apoptosis by inhibiting protein targets PPT1 and EEF1A1.
- A sparse-feature genetic biomarker was successfully generated to predict didemnin B sensitivity.
- The biomarker holds potential for patient selection in didemnin B therapy.
Conclusions:
- Didemnin B's anticancer effect is mediated by dual inhibition of PPT1 and EEF1A1, leading to apoptosis.
- A novel genetic biomarker can predict patient response, potentially improving didemnin B's therapeutic utility.
- This research paves the way for personalized cancer treatment strategies using didemnin B.
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