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Analysis of Termination of Transcription Using BrUTP-strand-specific Transcription Run-on TRO Approach
Published on: March 12, 2017
[Readthrough on transcription factor NKX2.5 premature stop codon by tRNA suppressors]
Ping Ouyang1, Yuan-Hang Liu2, Zhi-Gang Huang3
1Guangdong Provincial Key Laboratory of Medical Molecular Diagnostics, Guangdong Medical College, Dongguan 523808, China.
Abstract:
Human NKX2.5 (NK2 homeobox 5) premature stop codon (PTC) mutations cause congenital heart diseases such as atrial septal defect and atrioventricular block. At present, eight NKX2.5 PTC mutations were reported as E109X, Q149X, Q170X, Q187X, Q198X, Y256X, Y259X and C264X. To observe the ability of tRNA suppressors to read through NKX2.5 PTC mutations and produce functional full-length proteins, eight NKX2.5 PTC mutations were cloned into pcDNA3.1(-) vectors and four fragments (wild-type NKX2.5, E109X, Q149X and C264X) were cloned in pEGFP-N1 vectors to acquire NKX2.5-EGFP fusing plasmids. After transfection of NKX2.5-EGFP with or without corresponding tRNA suppressor into HeLa cells, the quantity of EGFP was measured to confirm the readthrough ability of the PTCs. NKX2.5 full-length and truncated protein expression levels were examined by Western blotting and the readthrough efficiency of tRNA suppressors on the PTCs was calculated respectively. The activity of NKX2.5 full-length and truncated protein was confirmed on NKX2.5 target gene-Cx43 mRNA level measured by Real-time PCR. Three tRNA suppressors were used: tRNA am, tRNA oc and tRNA op. tRNA am could suppress UAG-containing PTCs Q149X, Q170X, Q187X, Q198X and the readthrough efficiency for the latter three was above 50%. tRNA op could suppress UGA-containing PTC C264X with ~50% readthrough efficiency. tRNA oc failed to read through NKX2.5 PTC mutations. The relative Cx43 mRNA level in all readthrough samples was increased to 7%-41.7%. In conclusion, tRNA am and tRNA op could suppress NKX2.5 PTCs and induce functional protein expression. However, the effects of tRNA suppressors on cellular function are not clear yet, warranting further researches.
Insights
Certain tRNA suppressors can read through NKX2.5 premature stop codon mutations, enabling the production of functional NKX2.5 proteins. This offers a potential therapeutic strategy for congenital heart diseases caused by these mutations.
Area of Science:
- Genetics
- Molecular Biology
- Developmental Biology
Background:
- Human NKX2.5 premature stop codon (PTC) mutations are linked to congenital heart diseases.
- Eight specific NKX2.5 PTC mutations (E109X, Q149X, Q170X, Q187X, Q198X, Y256X, Y259X, C264X) have been identified.
Purpose of the Study:
- To evaluate the efficacy of tRNA suppressors in enabling readthrough of NKX2.5 PTC mutations.
- To determine if readthrough results in functional full-length NKX2.5 protein expression and activity.
Main Methods:
- NKX2.5 PTC mutations were cloned into expression vectors (pcDNA3.1(-) and pEGFP-N1).
- HeLa cells were transfected with NKX2.5-EGFP constructs and tRNA suppressors (tRNA am, tRNA oc, tRNA op).
- Protein expression (Western blotting), EGFP quantity, and target gene (Cx43) mRNA levels (Real-time PCR) were analyzed.
Main Results:
- tRNA am suppressed UAG-containing PTCs (Q149X, Q170X, Q187X, Q198X) with over 50% efficiency for Q170X, Q187X, Q198X.
- tRNA op suppressed UGA-containing PTC C264X with approximately 50% efficiency.
- tRNA oc showed no readthrough ability; Cx43 mRNA levels increased by 7%-41.7% in successful readthrough samples.
Conclusions:
- tRNA am and tRNA op can effectively suppress NKX2.5 PTCs, inducing functional protein expression.
- This readthrough mechanism holds potential for treating NKX2.5-related congenital heart defects.
- Further research is needed to clarify the cellular effects of tRNA suppressors.
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