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Semiconductor Sequencing for Preimplantation Genetic Testing for Aneuploidy
Published on: August 25, 2019
Prenatal screening of cytogenetic anomalies - a Western Indian experience
Frenny Sheth1, Mizanur Rahman2, Thomas Liehr3
1FRIGE's Institute of Human Genetics, FRIGE House, Satellite, Jodhpur Gam Road, 380015, Ahmedabad, India. fshethad1@googlemail.com.
Insights
Prenatal cytogenetic analysis detected chromosomal abnormalities in 7.2% of high-risk samples. Trisomy 21 was most common, highlighting the importance of comprehensive genetic testing for congenital anomalies.
Area of Science:
- Genetics
- Prenatal Diagnostics
- Human Genetics
Background:
- Congenital anomalies lead to high rates of perinatal and neonatal mortality.
- Cytogenetic analysis is crucial for diagnosing these conditions, alongside clinical and biochemical screening.
- This study investigates the prevalence and types of chromosomal abnormalities in high-risk prenatal samples.
Purpose of the Study:
- To characterize the prevalence and types of chromosomal abnormalities in high-risk prenatal samples.
- To evaluate the utility of different cytogenetic techniques in prenatal diagnosis.
- To identify common and rare chromosomal aberrations in a prenatal cohort.
Main Methods:
- Analysis of 1,728 prenatal samples (amniotic fluid, chorionic villi, cord blood) from 1994-2014.
- Conventional karyotyping using GTG-banding.
- Molecular cytogenetic techniques, including fluorescence in situ hybridization (FISH) and array comparative genomic hybridization (aCGH), were employed when indicated.
Main Results:
- Abnormal karyotypes were found in 7.2% (125/1,728) of cases.
- The most frequent abnormality was Trisomy 21 (2.7%), followed by Trisomy 18 (0.6%) and Trisomy 13 (0.1%).
- Structural abnormalities (translocations, inversions), Turner syndrome, and small supernumerary marker chromosomes (sSMC) were also identified.
Conclusions:
- Conventional and molecular cytogenetic techniques effectively detect genomic alterations and rearrangements.
- Comprehensive characterization of chromosomal abnormalities, including sSMC, aids in accurate prenatal diagnosis.
- Accurate diagnosis can prevent the termination of potentially healthy fetuses.
Background:
Children born with congenital anomalies present a very high rate of perinatal death and neonatal mortality. Cytogenetic analysis is a convincing investigation along with clinical suspicion and biochemical screening tests. The current study was designed to characterize the prevalence and types of chromosomal abnormalities in high risk prenatal samples using different cytogenetic techniques.
Methods:
This study was conducted on a total of 1,728 prenatal samples (1,324 amniotic fluids, 366 chorionic villi and 38 cord blood samples) from 1994 to 2014 at Institute of Human Genetics, Ahmedabad, India. Conventional karyotyping was conducted with GTG-banding. Molecular approaches were used (fluorescence in situ hybridization = FISH and/ or array-comparative genomic hybridization = aCGH) when indicated to detect karyotypic abnormalities.
Results:
Abnormal karyotypes were detected in 125/1,728 (7.2%) cases. Trisomy 21 was the most common abnormality detected in 46 (2.7%) followed by trisomy 18 in 11 (0.6%) and trisomy 13 in 2 (0.1%) samples. Besides, structural abnormalities such as reciprocal and Robertsonian translocation were detected in 20 [1.2%] cases. Turner syndrome was diagnosed in seven (0.4%) cases; in six (0.34%) cases there was an inversion in the Y-chromosome. Heteromorphic variants were diagnosed in 22 (1.3%) cases. Finally, small supernumerary marker chromosomes (sSMC) were found in six (0.34%) cases.
Conclusion:
Conventional GTG-banding along with molecular cytogenetic techniques is useful in detecting genomic alterations and rearrangements. Comprehensive characterization of chromosomal rearrangements like sSMC has the potential to save potentially healthy fetuses from being terminated.
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