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Published on: May 13, 2019
Protein Degradation of RNA Polymerase II-Association Factor 1(PAF1) Is Controlled by CNOT4 and 26S Proteasome
Hwa-Young Sun1, Nari Kim1, Cheol-Sang Hwang1
1Department of Life Sciences, Pohang University of Science and Technology, Pohang, Korea.
Abstract:
The PAF complex (PAFc) participates in various steps of the transcriptional process, from initiation to termination, by interacting with and recruiting various proteins to the proper locus for each step. PAFc is an evolutionarily conserved, multi-protein complex comprising PAF1, CDC73, CTR9, LEO1, yRTF1 and, in humans, hSKI8. These components of PAFc work together, and their protein levels are closely interrelated. In the present study, we investigated the mechanism of PAF1 protein degradation. We found that PAF1 protein levels are negatively regulated by the expression of CNOT4, an ortholog of yNOT4 and a member of the CCR4-NOT complex. CNOT4 specifically controls PAF1 but not other components of PAFc at the protein level by regulating the polyubiquitination of PAF1 and its subsequent degradation by the 26S proteasome. The degradation of PAF1 was found to require nuclear localization, as no PAF1 degradation by CNOT4 and the 26S proteasome was observed with NLS (nucleus localization signal)-deficient PAF1 mutants. However, chromatin binding by PAF1 was not necessary for 26S proteasome- or CNOT4-mediated degradation. Our results suggest that CNOT4 controls the degradation of chromatin-unbound PAF1 via the 26S proteasome.
Insights
The CCR4-NOT complex component CNOT4 targets PAF1 for degradation via the 26S proteasome. This process requires nuclear localization but not chromatin binding, regulating PAF1 protein levels.
Area of Science:
- Molecular Biology
- Gene Regulation
- Protein Degradation
Background:
- The Polycomb Repressive Complex Associated Factor (PAF) complex (PAFc) is crucial for transcriptional regulation.
- PAFc components, including PAF1, interact to control transcription from initiation to termination.
- Understanding the regulation of PAFc component stability is vital for comprehending transcriptional control.
Purpose of the Study:
- To elucidate the mechanism regulating PAF1 protein degradation.
- To identify factors controlling PAF1 protein stability within the PAF complex.
Main Methods:
- Investigated PAF1 protein degradation using CNOT4 expression.
- Analyzed PAF1 polyubiquitination and 26S proteasome-mediated degradation.
- Utilized nucleus localization signal (NLS)-deficient PAF1 mutants to assess localization requirements.
Main Results:
- CNOT4 negatively regulates PAF1 protein levels.
- CNOT4 promotes PAF1 polyubiquitination and subsequent 26S proteasome degradation.
- PAF1 degradation by CNOT4 requires nuclear localization but not chromatin binding.
Conclusions:
- CNOT4 controls the degradation of nuclear, chromatin-unbound PAF1 via the 26S proteasome.
- This mechanism provides specific regulation of PAF1 protein levels within the PAF complex.
- The findings offer insights into the dynamic regulation of transcriptional machinery.
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