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Updated: Apr 13, 2026

A Semi-Quantitative Drug Affinity Responsive Target Stability DARTS assay for studying Rapamycin/mTOR interaction
Published on: August 27, 2019
Apoptotic effects of high-dose rapamycin occur in S-phase of the cell cycle
Mahesh Saqcena1, Deven Patel, Deepak Menon
1a Department of Biological Sciences ; Hunter College of the City University of New York ; New York , NY USA.
Abstract:
Mutations in genes encoding regulators of mTOR, the mammalian target of rapamycin, commonly provide survival signals in cancer cells. Rapamycin and analogs of rapamycin have been used with limited success in clinical trials to target mTOR-dependent survival signals in a variety of human cancers. Suppression of mTOR predominantly causes G1 cell cycle arrest, which likely contributes to the ineffectiveness of rapamycin-based therapeutic strategies. While rapamycin causes the accumulation of cells in G1, its effect in other cell cycle phases remains largely unexplored. We report here that when synchronized MDA-MB-231 breast cancer cells are allowed to progress into S-phase from G1, rapamycin activates the apoptotic machinery with a concomitant increase in cell death. In Calu-1 lung cancer cells, rapamycin induced a feedback increase in Akt phosphorylation at Ser473 in S-phase that mitigated rapamycin-induced apoptosis. However, sensitivity to rapamycin in S-phase could be reestablished if Akt phosphorylation was suppressed. We recently reported that glutamine (Gln) deprivation causes K-Ras mutant cancer cells to aberrantly arrest primarily in S-phase. Consistent with observed sensitivity of S-phase cells to rapamycin, interfering with Gln utilization sensitized both MDA-MB-231 and Calu-1 K-Ras mutant cancer cells to the apoptotic effect of rapamycin. Importantly, rapamycin induced substantially higher levels of cell death upon Gln depletion than that observed in cancer cells that were allowed to progress through S-phase after being synchronized in G1. We postulate that exploiting metabolic vulnerabilities in cancer cells such as S-phase arrest observed with K-Ras-driven cancer cells deprived of Gln, could be of great therapeutic potential.
Insights
Rapamycin effectively kills cancer cells in S-phase, especially when glutamine is limited. This suggests targeting cancer cell metabolism alongside mTOR inhibition could improve cancer therapy.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Metabolism
Background:
- Mutations in mTOR regulators promote cancer cell survival.
- Rapamycin, an mTOR inhibitor, has shown limited success in clinical trials due to cell cycle arrest.
- The effects of rapamycin on cell cycle phases beyond G1 are not well understood.
Purpose of the Study:
- To investigate the efficacy of rapamycin in different cell cycle phases.
- To explore the role of Akt phosphorylation and glutamine metabolism in rapamycin sensitivity.
- To evaluate combination strategies for enhanced cancer cell death.
Main Methods:
- Cell synchronization (MDA-MB-231, Calu-1) to control cell cycle progression.
- Rapamycin treatment and assessment of apoptosis.
- Glutamine deprivation and its effect on cell viability and rapamycin sensitivity.
- Analysis of Akt phosphorylation at Ser473.
Main Results:
- Rapamycin induced apoptosis and cell death in S-phase cancer cells.
- Akt phosphorylation at Ser473 in S-phase cells mitigated rapamycin's apoptotic effect.
- Glutamine deprivation caused S-phase arrest in K-Ras mutant cells, sensitizing them to rapamycin.
- Combined glutamine depletion and rapamycin significantly increased cancer cell death.
Conclusions:
- Targeting cancer cells in S-phase with rapamycin shows therapeutic potential.
- Combining mTOR inhibition with metabolic interventions like glutamine deprivation enhances anti-cancer effects.
- Exploiting metabolic vulnerabilities, such as S-phase arrest in K-Ras-driven cancers, may offer novel therapeutic strategies.
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