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Testing Targeted Therapies in Cancer using Structural DNA Alteration Analysis and Patient-Derived Xenografts
Published on: July 25, 2020
Conventional chemotherapy and oncogenic pathway targeting in ovarian carcinosarcoma using a patient-derived
Gretchen Glaser1, S John Weroha2, Marc A Becker2
1Division of Gynecologic Surgery, Mayo Clinic, Rochester, MN, United States of America.
Abstract:
Ovarian carcinosarcoma is a rare subtype of ovarian cancer with poor clinical outcomes. The low incidence of this disease makes accrual to large clinical trials challenging. However, studies have shown that treatment responses in patient-derived xenograft (PDX) models correlate with matched-patient responses in the clinic, supporting their use for preclinical testing of standard and novel therapies. An ovarian carcinosarcoma PDX is presented herein and showed resistance to carboplatin and paclitaxel (similar to the patient) but exhibited significant sensitivity to ifosfamide and paclitaxel. The PDX demonstrated overexpression of EGFR mRNA and gene amplification by array comparative genomic hybridization (log2 ratio 0.399). EGFR phosphorylation was also detected. Angiogensis and insulin-like growth factor pathways were also implicated by overexpression of VEGFC and IRS1. In order to improve response to chemotherapy, the PDX was treated with carboplatin/paclitaxel with or without a pan-HER and VEGF inhibitor (BMS-690514) but there was no tumor growth inhibition or improved animal survival, which may be explained by a KRAS mutation. Resistance was also observed when the IGF-1R inhibitor BMS-754807 was combined with carboplatin/paclitaxel. Because poly (ADP-ribose) polymerase inhibitors have activity in ovarian cancer patients, with and without BRCA mutations, ABT-888 was also tested but found to have no activity. Pathogenic mutations were also detected in TP53 and PIK3CA. In conclusion, ifosfamide/paclitaxel was superior to carboplatin/paclitaxel in this ovarian carcinosarcoma PDX and gene overexpression or amplification alone was not sufficient to predict response to targeted therapy. Better predictive markers of response are needed.
Insights
Ovarian carcinosarcoma patient-derived xenografts (PDX) show ifosfamide/paclitaxel is superior to carboplatin/paclitaxel. Targeted therapies showed limited efficacy, highlighting the need for better predictive markers for this rare ovarian cancer.
Area of Science:
- Oncology
- Genomics
- Pharmacology
Background:
- Ovarian carcinosarcoma is rare with poor outcomes, hindering clinical trials.
- Patient-derived xenografts (PDX) can model patient responses for preclinical testing.
Purpose of the Study:
- To characterize an ovarian carcinosarcoma PDX model.
- To evaluate standard and novel therapeutic strategies in this PDX model.
Main Methods:
- Developed and characterized an ovarian carcinosarcoma PDX model.
- Assessed sensitivity to carboplatin, paclitaxel, ifosfamide, pan-HER/VEGF inhibitors, IGF-1R inhibitors, and PARP inhibitors.
- Performed gene expression, array comparative genomic hybridization, and mutation analysis (EGFR, KRAS, TP53, PIK3CA).
Main Results:
- The PDX model mirrored patient resistance to carboplatin/paclitaxel but showed sensitivity to ifosfamide/paclitaxel.
- EGFR overexpression/amplification, VEGFC, and IRS1 overexpression were observed.
- Targeted therapies (pan-HER/VEGF, IGF-1R inhibitors) combined with chemotherapy did not improve outcomes, potentially due to KRAS mutation.
- PARP inhibitor ABT-888 showed no activity. Pathogenic TP53 and PIK3CA mutations were identified.
Conclusions:
- Ifosfamide/paclitaxel demonstrated superior efficacy over carboplatin/paclitaxel in the ovarian carcinosarcoma PDX model.
- Gene overexpression or amplification alone is insufficient to predict targeted therapy response.
- Development of improved predictive biomarkers is crucial for effective treatment of ovarian carcinosarcoma.
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