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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Rare Complex Mutational Profile in an ALK Inhibitor-resistant Non-small Cell Lung Cancer
Elizabeth M Azzato1, Charuhas Deshpande2, Vania Aikawa2
1Department of Pathology and Laboratory Medicine, Division of Hematology/Oncology, Hospital of the University of Pennsylvania, Philadelphia, PA, U.S.A. Elizabeth.Azzato@uphs.upenn.edu elizabeth.azzato@gmail.com.
Abstract:
Testing for somatic alterations, including anaplastic lymphoma receptor tyrosine kinase gene (ALK) rearrangements and epidermal growth factor receptor gene (EGFR) mutations, is standard practice in the diagnostic evaluation and therapeutic management of non-small cell lung cancer (NSCLC), where the results of such tests can predict response to targeted-therapy. ALK rearrangements, EGFR mutations and mutations in the Kirsten rat sarcoma viral oncogene homolog (KRAS) are considered mutually exclusive in NSCLC. Herein we identified a KRAS Q22K mutation and frameshift mutations in the genes encoding serine/threonine kinase 11 (STK11) and ataxia telangiectasia mutated serine/threonine kinase (ATM) by next-generation sequencing in a patient with ALK rearrangement-positive oligo-metastatic NSCLC, whose disease progressed while on two ALK-targeted therapies. Such a complex diagnostic genetic profile has not been reported in ALK fusion-positive NSCLC. This case highlights the utility of comprehensive molecular testing in the diagnosis of NSCLC.
Insights
This study reports a rare case of non-small cell lung cancer (NSCLC) with an anaplastic lymphoma receptor tyrosine kinase (ALK) rearrangement and concurrent KRAS, STK11, and ATM mutations. Comprehensive molecular testing is crucial for diagnosing complex NSCLC genetic profiles.
Area of Science:
- Oncology
- Molecular Diagnostics
- Genetics
Background:
- Somatic alterations like anaplastic lymphoma receptor tyrosine kinase (ALK) rearrangements and epidermal growth factor receptor (EGFR) mutations guide non-small cell lung cancer (NSCLC) treatment.
- ALK rearrangements, EGFR mutations, and Kirsten rat sarcoma viral oncogene homolog (KRAS) mutations are typically mutually exclusive in NSCLC.
Observation:
- A patient with ALK rearrangement-positive oligo-metastatic NSCLC exhibited disease progression on two ALK-targeted therapies.
- Next-generation sequencing revealed a KRAS Q22K mutation and frameshift mutations in serine/threonine kinase 11 (STK11) and ataxia telangiectasia mutated serine/threonine kinase (ATM).
Findings:
- This represents a complex genetic profile not previously reported in ALK fusion-positive NSCLC.
- The identified mutations (KRAS Q22K, STK11, ATM) occurred alongside an ALK rearrangement.
Implications:
- This case underscores the importance of comprehensive molecular profiling in NSCLC.
- Advanced diagnostic techniques are essential for identifying complex genetic landscapes that may influence treatment response and resistance.
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