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Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Inhibition of the mevalonate pathway affects epigenetic regulation in cancer cells
Heidrun Karlic1, Roman Thaler2, Christopher Gerner3
1Ludwig Boltzmann Cluster Oncology, Vienna, Austria.
Abstract:
The mevalonate pathway provides metabolites for post-translational modifications such as farnesylation, which are critical for the activity of RAS downstream signaling. Subsequently occurring regulatory processes can induce an aberrant stimulation of DNA methyltransferase (DNMT1) as well as changes in histone deacetylases (HDACs) and microRNAs in many cancer cell lines. Inhibitors of the mevalonate pathway are increasingly recognized as anticancer drugs. Extensive evidence indicates an intense cross-talk between signaling pathways, which affect growth, differentiation, and apoptosis either directly or indirectly via epigenetic mechanisms. Herein, we show data obtained by novel transcriptomic and corresponding methylomic or proteomic analyses from cell lines treated with pharmacologic doses of respective inhibitors (i.e., simvastatin, ibandronate). Metabolic pathways and their epigenetic consequences appear to be affected by a changed concentration of NADPH. Moreover, since the mevalonate metabolism is part of a signaling network, including vitamin D metabolism or fatty acid synthesis, the epigenetic activity of associated pathways is also presented. This emphasizes the far-reaching epigenetic impact of metabolic therapies on cancer cells and provides some explanation for clinical observations, which indicate the anticancer activity of statins and bisphosphonates.
Insights
Metabolic pathway inhibitors like statins impact cancer cells by altering epigenetic mechanisms. These findings explain the anticancer effects of these drugs and highlight their broad epigenetic influence.
Area of Science:
- Biochemistry
- Molecular Biology
- Epigenetics
Background:
- The mevalonate pathway is crucial for post-translational modifications, including farnesylation, which regulates RAS downstream signaling.
- Aberrant signaling and epigenetic changes, such as DNA methyltransferase (DNMT1) stimulation and altered histone deacetylases (HDACs) and microRNAs, are observed in cancer cells.
- Mevalonate pathway inhibitors are emerging as potential anticancer agents, with evidence suggesting cross-talk between metabolic and epigenetic pathways.
Purpose of the Study:
- To investigate the epigenetic consequences of inhibiting the mevalonate pathway in cancer cells.
- To explore the impact of metabolic pathway inhibitors on gene expression, DNA methylation, and protein levels.
- To elucidate the connection between metabolic alterations and epigenetic modifications in cancer.
Main Methods:
- Transcriptomic, methylomic, and proteomic analyses were performed on cancer cell lines.
- Cells were treated with pharmacologic doses of mevalonate pathway inhibitors, including simvastatin and ibandronate.
- The study examined the effects on metabolic pathways, epigenetic regulators, and associated signaling networks.
Main Results:
- Pharmacologic doses of mevalonate pathway inhibitors induced significant epigenetic changes in cancer cells.
- Altered concentrations of NADPH were linked to metabolic pathway dysregulation and subsequent epigenetic consequences.
- The study revealed extensive cross-talk between mevalonate metabolism, vitamin D metabolism, and fatty acid synthesis, impacting epigenetic activity.
Conclusions:
- Metabolic therapies targeting the mevalonate pathway exert a far-reaching epigenetic impact on cancer cells.
- These findings provide a molecular explanation for the observed anticancer activity of statins and bisphosphonates.
- Understanding these metabolic-epigenetic interactions is crucial for developing novel cancer therapies.
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