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Updated: Feb 11, 2026

ATAC-Seq Optimization for Cancer Epigenetics Research
Published on: June 30, 2022
CCR 20th Anniversary Commentary: Expanding the Epigenetic Therapeutic Portfolio
Susan E Bates1, Robert W Robey2, Richard L Piekarz3
1Developmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland. batess@helix.nih.gov.
Abstract:
Epigenetic targets have emerged as an exciting area for drug discovery. The discovery that histone deacetylase (HDAC) inhibitors had marked anticancer activity in T-cell lymphoma gave impetus to the field. In a phase I study published in Clinical Cancer Research in March 2002, romidepsin (depsipeptide), a potent HDAC inhibitor, was found to be tolerable, with a side effect profile that was later understood to be characteristic of this class of agents. Evidence of activity in this key phase I trial provided momentum for the further study of epigenetic agents.
Insights
Histone deacetylase (HDAC) inhibitors show promise as anticancer drugs. A phase I trial found romidepsin, a potent HDAC inhibitor, to be tolerable and effective in T-cell lymphoma, driving further epigenetic agent research.
Area of Science:
- Epigenetics and Drug Discovery
- Oncology
- Pharmacology
Background:
- Epigenetic modifications are crucial in cancer development.
- Histone deacetylase (HDAC) inhibitors have demonstrated significant anticancer potential.
- Early research indicated HDAC inhibitors' efficacy in T-cell lymphoma.
Purpose of the Study:
- To evaluate the safety and tolerability of romidepsin, a novel HDAC inhibitor.
- To assess the preliminary efficacy of romidepsin in a phase I clinical trial.
- To establish the characteristic side effect profile for HDAC inhibitors.
Main Methods:
- Phase I clinical trial design.
- Administration of romidepsin (depsipeptide).
- Monitoring of patient tolerability and side effects.
Main Results:
- Romidepsin was found to be tolerable in patients.
- A side effect profile characteristic of HDAC inhibitors was observed.
- Evidence of clinical activity was noted, supporting further investigation.
Conclusions:
- Romidepsin is a tolerable HDAC inhibitor with potential anticancer activity.
- The phase I trial provided crucial data for the development of epigenetic therapies.
- This study propelled further research into epigenetic agents for cancer treatment.
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