Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Molecular Models02:00

Molecular Models

45.7K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
45.7K
Molecular Shapes01:18

Molecular Shapes

63.5K
Molecules have characteristic shapes that are crucial for their function. The arrangement of various electron groups around the central atom dictates their molecular geometry. Electron pairs in the valence shell of a central atom will adopt an arrangement that minimizes repulsions between the electron pairs by maximizing the distance between them. The valence electrons form either bonding pairs, located primarily between bonded atoms, or lone pairs.
Two regions of electron density in a diatomic...
63.5K
Molecules and Compounds02:38

Molecules and Compounds

75.1K
Atoms and Molecules
75.1K
Applications of Molecular Taxonomy01:20

Applications of Molecular Taxonomy

671
Molecular taxonomy has revolutionized the understanding and classification of bacteria, providing precise insights into their diversity, evolutionary relationships, and ecological roles. By utilizing molecular techniques such as DNA sequencing and fingerprinting, researchers have made significant strides in various fields related to bacterial studies.Resolving Taxonomic AmbiguitiesMolecular taxonomy has been instrumental in distinguishing closely related bacterial species initially thought to...
671
The Fluid Mosaic Model01:34

The Fluid Mosaic Model

185.8K
The fluid mosaic model was first proposed as a visual representation of research observations. The model comprises the composition and dynamics of membranes and serves as a foundation for future membrane-related studies. The model depicts the structure of the plasma membrane with a variety of components, which include phospholipids, proteins, and carbohydrates. These integral molecules are loosely bound, defining the cell’s border and providing fluidity for optimal function.
185.8K
Modern Molecular Taxonomy01:29

Modern Molecular Taxonomy

844
Advancements in molecular biology have revolutionized the identification and characterization of bacteria, with multiple methods leveraging DNA sequencing for enhanced precision. As sequencing technologies improve and costs decline, these approaches are increasingly used in clinical, environmental, and evolutionary studies.Multilocus Sequence Typing (MLST) examines several housekeeping genes, essential chromosomal genes encoding cellular functions, to distinguish strains. Approximately...
844

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Does the Symbiotic Relationship Between Hydra Viridissima and Photoautotrophic Alga Provide an Evolutionary Advantage in Protecting DNA against Damage by the Cytotoxic or Genotoxic Mode of Action of Environmental Stressors?

Bulletin of environmental contamination and toxicology·2024
Same author

Hydrogen bonding in glassy trehalose-water system: Insights from density functional theory and molecular dynamics simulations.

The Journal of chemical physics·2024
Same author

An embedded cluster CASPT2 study of the Ce:YVO4 spectrum.

The Journal of chemical physics·2023
Same author

The OpenMolcas <i>Web</i>: A Community-Driven Approach to Advancing Computational Chemistry.

Journal of chemical theory and computation·2023
Same author

Expansion of multicenter Coulomb integrals in terms of two-center integrals.

The Journal of chemical physics·2022
Same author

Gaussian product rule for two-electron wave functions.

The Journal of chemical physics·2022

Related Experiment Video

Updated: Apr 12, 2026

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

12.0K

Luscus: molecular viewer and editor for MOLCAS.

Goran Kovačević1, Valera Veryazov2

  • 1Division of Materials Physics, Ruđer Bošković Institute, Bijenička 54, P.O.Box 180, Zagreb, HR-10002 Croatia.

Journal of Cheminformatics
|May 19, 2015
PubMed
Summary

Luscus is a novel molecular visualization program for building and editing large molecular systems. It aids in understanding chemical concepts and molecular modeling for students and researchers.

Keywords:
GraphicsMolecular editorMolecular modellingSoftwareVisualisation

More Related Videos

Exploring Caspase Mutations and Post-Translational Modification by Molecular Modeling Approaches
05:56

Exploring Caspase Mutations and Post-Translational Modification by Molecular Modeling Approaches

Published on: October 13, 2022

1.9K
A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

36.3K

Related Experiment Videos

Last Updated: Apr 12, 2026

Modeling an Enzyme Active Site using Molecular Visualization Freeware
14:37

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Published on: December 25, 2021

12.0K
Exploring Caspase Mutations and Post-Translational Modification by Molecular Modeling Approaches
05:56

Exploring Caspase Mutations and Post-Translational Modification by Molecular Modeling Approaches

Published on: October 13, 2022

1.9K
A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

36.3K

Area of Science:

  • Computational Chemistry
  • Molecular Modeling
  • Scientific Visualization

Background:

  • Molecular modeling and visualization are crucial for understanding chemical structures and properties.
  • Existing tools may lack flexibility or ease of use for complex molecular systems.
  • There is a need for adaptable software to interface with various computational chemistry packages.

Purpose of the Study:

  • To introduce Luscus, a new graphical program for molecular system display and editing.
  • To highlight Luscus's capabilities in visualizing diverse molecular properties and geometrical features.
  • To demonstrate Luscus's adaptability for use with multiple computational packages and chemical formats.

Main Methods:

  • Development of a novel graphical user interface (GUI) for molecular systems.
  • Implementation of plug-in architecture for supporting various chemical file formats.
  • Integration with MOLCAS program package as a primary interface.
  • Capability to visualize dipole moments, normal modes, molecular orbitals, electron densities, and electrostatic potentials.

Main Results:

  • Luscus enables fast and easy building and editing of molecular structures up to thousands of atoms.
  • The program effectively visualizes various molecular properties and geometrical features.
  • Its plug-in system allows for straightforward integration of new file formats.
  • Luscus serves as an effective graphical interface for MOLCAS and other computational packages.

Conclusions:

  • Luscus is a versatile and user-friendly tool for molecular visualization and editing.
  • Its adaptive design makes it suitable for diverse computational chemistry workflows.
  • The program's ease of use makes it valuable for educational purposes in chemistry and molecular modeling.